Alternatives and similar repositories for romim:

Users that are interested in romim are comparing it to the libraries listed below

• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆62Updated 2 months ago
• hansenlab / minfi
  Devel repository for minfi
  ☆60Updated 11 months ago
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆106Updated last year
• mikelove / deseq2_or_edger
  DESeq2 or edgeR
  ☆22Updated 8 years ago
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆73Updated 2 weeks ago
• stephaniehicks / bioconductorNotes
  My notes/usage examples for various Bioconductor packages
  ☆15Updated 8 years ago
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆71Updated last month
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆96Updated 3 weeks ago
• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆45Updated 4 months ago
• BIMSBbioinfo / genomation
  R package for genomic feature analysis and visualization
  ☆76Updated 5 years ago
• CBIIT / LDlinkR
  LDlinkR
  ☆58Updated 11 months ago
• Bioconductor / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆27Updated 2 weeks ago
• PeeperLab / Rtoolbox
  Toolbox with R scripts
  ☆38Updated 6 years ago
• cran / WGCNA
   This is a read-only mirror of the CRAN R package repository. WGCNA — Weighted Correlation Network Analysis
  ☆54Updated 6 months ago
• Bioconductor / BiocWorkshops
  2018 Bioconductor Workshops
  ☆75Updated 5 years ago
• Shians / Glimma
  Glimma R package
  ☆50Updated 7 months ago
• YuLab-SMU / ReactomePA
  Reactome Pathway Analysis
  ☆40Updated 5 months ago
• seandavi / GEOquery
  The bridge between the NCBI Gene Expression Omnibus and Bioconductor
  ☆93Updated 4 months ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆58Updated 4 months ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated 2 weeks ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆57Updated 6 months ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆44Updated last year
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated 4 months ago
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆44Updated 4 years ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• kevinblighe / CorLevelPlot
  Visualise correlation results and test significancies of these
  ☆23Updated 5 years ago
• ramiromagno / gwasrapidd
  gwasrapidd: an R package to query, download and wrangle GWAS Catalog data
  ☆96Updated last year
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆41Updated 3 months ago
• Bioconductor / OrchestratingSingleCellAnalysis-release
  An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
  ☆36Updated 2 years ago
• stemangiola / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆36Updated 3 months ago