bhklab / genefuLinks
R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.
☆27Updated 6 months ago
Alternatives and similar repositories for genefu
Users that are interested in genefu are comparing it to the libraries listed below
Sorting:
- ☆41Updated 7 years ago
- ☆62Updated 5 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆66Updated 2 years ago
- ☆59Updated 3 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆117Updated 4 months ago
- Dichotomous of innate immune landscape☆17Updated 6 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆52Updated 7 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆49Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated 4 months ago
- GLASS consortium☆42Updated 5 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Easily download publicly available GWAS summary statistics.☆76Updated 2 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 6 years ago
- ☆43Updated 2 years ago
- Single-CELL rna-seq analysis software☆39Updated 8 years ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- Immunology-related bioinformatics data and tools☆76Updated last year
- Bayesian network plot for the enrichment analysis results☆66Updated last year
- Identify and correct invalid gene symbols☆60Updated last year
- collection of notebooks with different cytoscape workflows☆50Updated 2 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- Tools for manipulating annotated data matrices☆91Updated 4 years ago
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆43Updated 5 years ago