R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.
☆31May 20, 2025Updated last year
Alternatives and similar repositories for genefu
Users that are interested in genefu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package☆22Dec 16, 2023Updated 2 years ago
- Biostatistics 6301: Introduction to Statistical Computing☆14Aug 15, 2024Updated 2 years ago
- ☆19Jun 18, 2026Updated 2 months ago
- ☆11Jun 14, 2023Updated 3 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆16Jul 5, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆21Jan 17, 2020Updated 6 years ago
- Workshop materials for SFSU SCIP 2022.☆16Jun 6, 2022Updated 4 years ago
- Snakemake workflow for somatic mutation detection without matched normal samples☆14Mar 4, 2023Updated 3 years ago
- CNV detection tool for targeted NGS panel data☆17Feb 28, 2022Updated 4 years ago
- Altered TCR Ligand Affinities and Structures☆13Dec 1, 2023Updated 2 years ago
- R package for Non-negative Tensor Decomposition☆22May 8, 2026Updated 3 months ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Aug 6, 2019Updated 7 years ago
- Central repository for the Multiplexed Tissue Imaging Workshop 2023.☆10Jan 9, 2023Updated 3 years ago
- The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Se…☆22Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A CNN - based pipeline for calling somatic SNP and INDEL variants without a matched normal☆11Sep 7, 2022Updated 3 years ago
- Clotho☆11Jul 14, 2015Updated 11 years ago
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆13Updated this week
- This repo contains the knitr code for the paper: Gillespie, C. S., et al, 2010. Analysing yeast time course microarray data using BioCond…☆12Jan 25, 2016Updated 10 years ago
- ☆15Nov 2, 2021Updated 4 years ago
- This repo is mainly for beginners to intermediate level ML/Bioiniformatics engineers/students/enthusiasts. It mainly focus on creating a …☆15Dec 28, 2024Updated last year
- Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma☆13Jun 4, 2023Updated 3 years ago
- ☆28Sep 20, 2023Updated 2 years ago
- ☆18Sep 13, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm☆18May 23, 2014Updated 12 years ago
- Vanderbilt Biostatistics Grad Student Handbook☆14Aug 21, 2026Updated 2 weeks ago
- Source code for 'SQL Server Advanced Data Types' by Peter A. Carter☆11Oct 4, 2018Updated 7 years ago
- ☆17Jan 9, 2023Updated 3 years ago
- Bridging the gap between IEnumerable and IDataReader for dealing with unstructured and loosely-structured data, plus fast ETL + SQL Bulk …☆10Aug 6, 2025Updated last year
- Sandbox for playing with Neo4J and graph approaches to NLP☆12Jul 12, 2017Updated 9 years ago
- A library for GNU make to schedule rules as jobs with qsub or sbatch☆11Mar 7, 2013Updated 13 years ago
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated 8 months ago
- Dichotomous of innate immune landscape☆17Aug 31, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 6 years ago
- ☆17Nov 23, 2021Updated 4 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆22Jan 19, 2026Updated 7 months ago
- My notes while learning datascience☆10May 26, 2018Updated 8 years ago
- ☆21Jun 23, 2023Updated 3 years ago
- Code for Dligach and Miller 2018 paper Learning Patient Representations from Text☆10Apr 2, 2023Updated 3 years ago