bhklab / genefu
R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.
☆25Updated last year
Related projects: ⓘ
- ☆40Updated 6 years ago
- ☆60Updated 4 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆41Updated 4 years ago
- ☆29Updated 6 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆73Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆25Updated 2 years ago
- Identify and correct invalid gene symbols☆55Updated 4 months ago
- Dichotomous of innate immune landscape☆17Updated 5 years ago
- Development repository for the multiMiR database's R API☆20Updated 3 weeks ago
- From IDAT to beta.☆25Updated 6 years ago
- ConsensusTME Gene Sets and R Script☆38Updated 3 months ago
- scDataviz: single cell dataviz and downstream analyses☆60Updated 2 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆19Updated 5 years ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆22Updated 2 years ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆27Updated 4 years ago
- Explore and share your scRNAseq clustering results☆46Updated last year
- ☆34Updated 8 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆41Updated 9 months ago
- R package☆21Updated 9 months ago
- scRNA-seq cell type identification☆41Updated 4 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆42Updated last year
- Multiscale embedded gene co-expression network analysis☆48Updated 8 months ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- Tools for manipulating annotated data matrices☆84Updated 2 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Updated 2 years ago
- ☆37Updated 2 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆43Updated 8 years ago
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆24Updated last year
- An R Package for Geneset Enrichment Workflows☆75Updated 3 months ago