Alternatives and similar repositories for DiscreteMorse

Users that are interested in DiscreteMorse are comparing it to the libraries listed below

• HuXiaoling / Warping
  Structure-Aware Image Segmentation with Homotopy Warping
  ☆12Updated 2 years ago
• HuXiaoling / DMT_loss
  DMT codes for the ICLR 2021 paper: Topology-Aware Segmentation Using Discrete Morse Theory
  ☆48Updated 2 years ago
• dmitrysarov / clDice
  pyTorch implementation of clDice
  ☆31Updated 5 years ago
• mwyburd / TEDS-Net
  Overview of architecture and implementation of TEDS-Net, as described in MICCAI 2021: "TEDS-Net: Enforcing Diffeomorphisms in Spatial Tra…
  ☆24Updated 2 years ago
• aAbdz / skeletonize
  2d and 3d distance transform based skeletonization
  ☆24Updated 2 years ago
• 5k5000 / DeepClosing
  The code of our paper 'Deep Closing: Enhancing Topological Connectivity in Medical Tubular Segmentation'
  ☆19Updated last year
• JonasLamy / LiverVesselness
  Repository for Vesselness algorithms
  ☆50Updated 2 months ago
• RUB-Bioinf / VesselExpress
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
  ☆53Updated last year
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆71Updated 3 years ago
• Limingxing00 / MitoEM2021-Challenge
  Accepted by ISBI 2022 (Oral)
  ☆39Updated 3 years ago
• shirgur / UMIS
  Official PyTorch implementation of "Unsupervised Microvascular Image Segmentation Using an Active Contours Mimicking Neural Network"
  ☆73Updated 4 years ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆39Updated 2 years ago
• HuXiaoling / TopoLoss
  Code for the NeurIPS 2019 paper: Topology-Preserving Deep Image Segmentation
  ☆175Updated 2 years ago
• clatfd / GNN-ART-LABEL
  Code and dataset for the MICCAI 2020 paper: Automated Intracranial Artery Labeling using a Graph Neural Network and Hierarchical Refineme…
  ☆29Updated 3 years ago
• MenelauseZzw / Vascular-Tree-Reconstruction
  Source code for CVPR 19 (Divergence Prior) & 21 (Confluent Vessel Tree) papers.
  ☆30Updated 4 years ago
• yihao6 / vfa
  ☆16Updated 8 months ago
• martinmenten / skeletonization-for-gradient-based-optimization
  ☆56Updated last year
• uncbiag / easyreg
  an image registration/augmentation/segmentation package
  ☆174Updated 2 years ago
• dgrzech / learnsim
  A variational Bayesian method for similarity learning in non-rigid image registration (CVPR 2022)
  ☆20Updated 3 years ago
• torms3 / Superhuman
  Superhuman Accuracy on the SNEMI3D Connectomics Challenge
  ☆14Updated 7 years ago
• timjerman / JermanEnhancementFilter
  Jerman's tubular (vessel) and spherical (blob) enhancement filters
  ☆73Updated 7 years ago
• multimodallearning / pdd_net
  Probabilistic Dense Displacement Network (3D discrete deep learning registration)
  ☆64Updated 4 years ago
• HKervadec / shape_descriptors
  Code for our MIDL 2021 submission
  ☆17Updated 4 years ago
• SteffenCzolbe / DeepSimRegistration
  ☆42Updated last year
• SAIL-GuoLab / Cell_Segmentation_and_Tracking
  For cell segmentation and tracking.
  ☆36Updated 5 years ago
• Haifafh / MFAT
  MATLAB implementation of '2D and 3D Vascular Structures Enhancement via Multiscale Fractional Anisotropy Tensor (MFAT)'
  ☆20Updated 7 years ago
• jongcye / CNN_MumfordShah_Loss
  ☆34Updated 5 years ago
• mhaft / DeepVess
  ☆30Updated last year
• InsightSoftwareConsortium / ITKThickness3D
  An ITK module to compute 3D thickness
  ☆42Updated last month
• JamesClough / topograd
  Topological Priors for Image segmentation
  ☆44Updated 6 years ago