wangdingkang / DiscreteMorseLinks
Discrete Morse-based pipeline for neuron tracing on tracer injection and single-neuron data sets.
☆13Updated 5 years ago
Alternatives and similar repositories for DiscreteMorse
Users that are interested in DiscreteMorse are comparing it to the libraries listed below
Sorting:
- Structure-Aware Image Segmentation with Homotopy Warping☆12Updated 2 years ago
- DMT codes for the ICLR 2021 paper: Topology-Aware Segmentation Using Discrete Morse Theory☆48Updated 2 years ago
- Overview of architecture and implementation of TEDS-Net, as described in MICCAI 2021: "TEDS-Net: Enforcing Diffeomorphisms in Spatial Tra…☆24Updated 3 years ago
- Repository for Vesselness algorithms☆50Updated 2 months ago
- 2d and 3d distance transform based skeletonization☆24Updated 2 years ago
- pyTorch implementation of clDice☆31Updated 6 years ago
- Source code for CVPR 19 (Divergence Prior) & 21 (Confluent Vessel Tree) papers.☆30Updated 4 years ago
- An ITK module to compute 3D thickness☆42Updated 2 months ago
- The code of our paper 'Deep Closing: Enhancing Topological Connectivity in Medical Tubular Segmentation'☆19Updated last year
- ☆16Updated 8 months ago
- Code and dataset for the MICCAI 2020 paper: Automated Intracranial Artery Labeling using a Graph Neural Network and Hierarchical Refineme…☆29Updated 3 years ago
- Official PyTorch implementation of "Unsupervised Microvascular Image Segmentation Using an Active Contours Mimicking Neural Network"☆73Updated 4 years ago
- ☆18Updated 3 years ago
- Deep 3D Vessel Segmentation based on Cross Transformer Network☆21Updated 3 years ago
- A curve skeletonization method for elongated objects that may be noisy, IEEE WACV paper, Aug. 2018 update.☆11Updated last year
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆53Updated last year
- SHAPR: Code for "Capturing Shape Information with Multi-Scale Topological Loss Terms for 3D Reconstruction"☆41Updated 2 years ago
- Semi-Supervised Neuron Segmentation via Reinforced Consistency Learning☆32Updated 3 years ago
- ☆56Updated 2 years ago
- A variational Bayesian method for similarity learning in non-rigid image registration (CVPR 2022)☆20Updated 3 years ago
- Topological Priors for Image segmentation☆44Updated 6 years ago
- Image-and-Spatial Transformer Networks☆112Updated 2 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Updated 2 years ago
- Accepted by ISBI 2022 (Oral)☆39Updated 3 years ago
- Neuroimaging in PyTorch☆100Updated this week
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆71Updated 3 years ago
- Python Vascular Network Analysis☆26Updated 5 months ago
- ☆59Updated 8 months ago
- ☆26Updated 3 years ago
- IEEE-TMI 2021: code for 'Graph-based Region and Boundary Aggregation for Biomedical Image Segmentation'☆32Updated 3 years ago