Alternatives and similar repositories for OmicsPLS

Users that are interested in OmicsPLS are comparing it to the libraries listed below

• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆64Updated last month
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆47Updated last month
• jokergoo / cola
  A General Framework for Consensus Partitioning
  ☆65Updated 11 months ago
• cmap / cmapR
  Tools for manipulating annotated data matrices
  ☆92Updated 4 years ago
• ConesaLab / MultiPower
  Statistical power studies for multi-omics experiments.
  ☆32Updated last year
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆66Updated last year
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆78Updated last month
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆66Updated 4 years ago
• YuLab-SMU / biomedical-knowledge-mining-book
  Biomedical knowledge mining using GOSemSim and clusterProfiler
  ☆83Updated this week
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆50Updated 2 years ago
• UCLouvain-CBIO / depmap
  Cancer Dependency Map package
  ☆33Updated last year
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆30Updated last year
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆69Updated last month
• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆24Updated 6 months ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆61Updated last year
• slowkow / tftargets
  Human transcription factor target genes from 6 databases in convenient R format.
  ☆86Updated 7 years ago
• wgmao / PLIER
  Pathway-Level Information Extractor (PLIER): a generative model for gene expression data
  ☆54Updated last year
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆56Updated 2 years ago
• Bioconductor / OrchestratingSingleCellAnalysis-release
  An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
  ☆37Updated 2 years ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆61Updated last year
• waldronlab / data-science-seminar
  Topics In Data Science and Bioinformatics
  ☆79Updated last year
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆61Updated 2 years ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomics ecosystem
  ☆74Updated 2 months ago
• CBIIT / LDlinkR
  LDlinkR
  ☆63Updated last year
• arnesmits / DEP
  DEP package
  ☆30Updated 3 years ago
• kordastilab / ImmunoCluster
  ☆27Updated 4 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• Huber-group-EMBL / biomaRt
  R package providing query functionality to BioMart instances like Ensembl
  ☆44Updated last week
• bzhanglab / OmicsEV
  A tool for large scale omics datasets evaluation
  ☆23Updated 2 years ago
• metaOmics / metaOmics
  Shiny GUI application for genomics meta-analysis
  ☆22Updated 5 years ago