seandavi / awesome-cancer-variant-databases

Related projects ⓘ

Alternatives and complementary repositories for awesome-cancer-variant-databases

• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆166Updated 3 years ago
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆342Updated 7 months ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆769Updated 3 months ago
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆680Updated 3 weeks ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆327Updated 3 months ago
• mskcc / vcf2maf
  Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
  ☆373Updated 4 months ago
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆307Updated this week
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆384Updated last week
• WGLab / doc-ANNOVAR
  Documentation for the ANNOVAR software
  ☆234Updated 2 weeks ago
• igordot / genomics
  A collection of scripts and notes related to genomics and bioinformatics
  ☆200Updated this week
• sigven / pcgr
  Personal Cancer Genome Reporter (PCGR)
  ☆253Updated 2 weeks ago
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆525Updated 3 months ago
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆389Updated 2 months ago
• j-andrews7 / awesome-bioinformatics-benchmarks
  A curated list of bioinformatics bench-marking papers and resources.
  ☆315Updated 3 months ago
• nf-core / chipseq
  ChIP-seq peak-calling, QC and differential analysis pipeline.
  ☆193Updated 3 weeks ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆385Updated 3 months ago
• suhrig / arriba
  Fast and accurate gene fusion detection from RNA-Seq data
  ☆226Updated last week
• Magdoll / cDNA_Cupcake
  Miscellaneous collection of Python and R scripts for processing Iso-Seq data
  ☆257Updated last year
• harvardinformatics / bioinformatics-coffee-hour
  Short lessons from FAS Informatics coffee hour
  ☆141Updated last year
• WGLab / InterVar
  A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
  ☆187Updated last year
• bioinform / somaticseq
  An ensemble approach to accurately detect somatic mutations using SomaticSeq
  ☆193Updated 2 months ago
• comprna / SUPPA
  SUPPA: Fast quantification of splicing and differential splicing
  ☆261Updated 4 months ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆311Updated 2 weeks ago
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆455Updated 4 years ago
• macarthur-lab / gene_lists
  List of gene lists for genomic analyses.
  ☆215Updated 2 years ago
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆275Updated 3 months ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆287Updated last year
• lindenb / jvarkit
  Java utilities for Bioinformatics
  ☆484Updated 2 weeks ago
• rnnh / bioinfo-notebook
  🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
  ☆154Updated 3 years ago
• snakemake-workflows / dna-seq-gatk-variant-calling
  This Snakemake pipeline implements the GATK best-practices workflow
  ☆242Updated last year