caponetto / bhc
Python implementation of Bayesian hierarchical clustering and Bayesian rose trees algorithms.
☆16Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for bhc
- generalized principal component analysis (GLM-PCA) implemented in python☆57Updated 3 years ago
- Tools for munging genomic data☆21Updated 5 years ago
- Network inference by fusing data from diverse distributions☆14Updated 7 years ago
- ☆21Updated 7 years ago
- Online Principal Component Analysis☆22Updated 2 years ago
- Attraction-Repulsion Spectrum in Neighbor Embeddings☆30Updated 2 years ago
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 4 years ago
- Tools for building and manipulating graphs in Python☆41Updated last year
- A project to capture biological pathway data from academic papers☆28Updated last week
- Python Wrapper for FIt-SNE☆45Updated 3 years ago
- Python Optimal Leaf Ordering for Hierarchical Clustering☆21Updated 7 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Updated 4 months ago
- Bayesian Factorization with Side Information in C++ with Python wrapper☆41Updated 2 years ago
- Repository for storing code related to the paper by Zdrazil B., Richter L., Brown N., and Guha R. "Moving Targets: Monitoring Target Tren…☆9Updated 3 years ago
- A library to simulate single-cell data☆2Updated last year
- Fast embedding ot multidimensional datasets, great for cytometry data☆25Updated 2 years ago
- A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions…☆47Updated 3 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Updated 3 years ago
- Systematically learn and evaluate manifolds from high-dimensional data☆95Updated last year
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Updated 7 years ago
- Python Matrix Factorization Module☆14Updated 7 years ago
- Use LSTM neural network for 1D distributional data prediction☆22Updated 2 years ago
- Developing efficient Bayesian phylogenetic inference methods☆11Updated 4 years ago
- R package: Manifold learning in R☆11Updated 4 years ago
- Categorical Variational Autoencoders☆23Updated 2 years ago
- Literature mining for T cell relations☆23Updated 2 years ago
- Fast computation of diffusion maps and geometric harmonics in Python. Moved to https://git.sr.ht/~jmbr/diffusion-maps☆41Updated 3 years ago
- Fast Inference of Networks from Directed Regulations☆21Updated 11 months ago
- algorithms for community detection from n-partite networks☆12Updated 4 years ago
- Documentation, models and code relating to the 3rd edition of the textbook Stochastic Modelling for Systems Biology☆32Updated 2 months ago