Borda / BIRLLinks
BIRL: Benchmark on Image Registration methods with Landmark validations
☆93Updated 3 years ago
Alternatives and similar repositories for BIRL
Users that are interested in BIRL are comparing it to the libraries listed below
Sorting:
- Framework for registration of sequential digitized histology slices☆28Updated 3 years ago
- Dataset: landmarks for registration of histology images☆33Updated 4 years ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆51Updated 2 years ago
- WSICS☆30Updated 6 years ago
- DRMIME - Differentiable Mutual Information and Matrix Exponential for Multi-Resolution Image Registration☆46Updated 5 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆74Updated 4 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆73Updated 9 months ago
- Whole Slide Digital Pathology Image Tissue Localization☆45Updated 2 years ago
- Software used by the AGH team during the ANHIR challenge.☆28Updated 4 years ago
- Image registration using pytorch☆184Updated last year
- Interactive Segmentation of Nucleus☆66Updated 2 years ago
- Thin wrapper around elastix - a toolbox for rigid and nonrigid registration of images☆110Updated 5 years ago
- Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python☆78Updated 3 years ago
- Code used to create the DeepHistReg submission to the ANHIR challenge.☆31Updated 6 months ago
- ☆92Updated 4 months ago
- an image registration/augmentation/segmentation package☆173Updated 2 years ago
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆255Updated last month
- NumPy and Tensorflow implementation of the Multidimensional Contrast Limited Adaptive Histogram Equalization (MCLAHE) procedure☆49Updated 3 years ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆52Updated last year
- ⚡ Open-source software for deep learning-based digital pathology☆138Updated last year
- Repository for Vesselness algorithms☆47Updated 2 weeks ago
- Official SuperElastix repository☆88Updated 6 years ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆79Updated 2 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆71Updated 2 years ago
- Code accompanying the paper Neural Image Compression for Gigapixel Histopathology Image Analysis☆49Updated 2 years ago
- A human in the loop solution to machine learning for pathologists (easy semantic segmentation of WSI)☆51Updated 5 years ago
- ☆194Updated 5 years ago
- Transparent and reproducible medical image processing pipelines in Python.☆50Updated last week
- a toolbox for manipulation of digital pathology slides and annotations☆19Updated 5 years ago
- PyTorch implementation of HighRes3DNet☆55Updated 3 months ago