scastlara / minineedle
Needleman-Wunsch and Smith-Waterman algorithms in python
☆47Updated 8 months ago
Alternatives and similar repositories for minineedle:
Users that are interested in minineedle are comparing it to the libraries listed below
- Tokenizers and Machine Learning Models for biological sequence data☆25Updated 6 months ago
- ☆14Updated last year
- Phenotype comparison tools using semantic similarity.☆63Updated 11 months ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- A framework for keeping biomedical text mining result up-to-date☆42Updated 4 years ago
- Python tools for proteogenomics analysis toolkit☆13Updated 11 months ago
- Literature mining for T cell relations☆23Updated 2 years ago
- Deep learning-based language model for glycan sequences☆16Updated 5 years ago
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44Updated 6 years ago
- A metadata commons to store research software metadata☆41Updated this week
- This is the public repository for the EPIC tool.☆17Updated 2 years ago
- Fast and Versatile Alignments for Python☆49Updated last year
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆32Updated 8 months ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆19Updated 6 years ago
- The Complete Python Antibody Library☆22Updated 8 months ago
- ☆10Updated 2 months ago
- ☆19Updated 2 weeks ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆12Updated 6 years ago
- Parsing MHC nomenclature in the wild☆16Updated last week
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Updated 3 years ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 3 years ago
- Pairwise string alignment in Python (Needleman-Wunsch and Smith-Waterman algorithms)☆97Updated 6 years ago
- Find bimodal, unimodal, and multimodal features in your data☆27Updated 6 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆24Updated 11 months ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 4 years ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆23Updated last month
- ☆31Updated 7 months ago
- Native Python library for generic sequence alignment☆55Updated 4 years ago