scastlara / minineedleLinks
Needleman-Wunsch and Smith-Waterman algorithms in python
☆48Updated last year
Alternatives and similar repositories for minineedle
Users that are interested in minineedle are comparing it to the libraries listed below
Sorting:
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆97Updated 6 months ago
- General low-level API☆50Updated 3 years ago
- Fast and Versatile Alignments for Python☆50Updated 2 years ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆88Updated 3 years ago
- The Complete Python Antibody Library☆24Updated last month
- An RNA manipulation library.☆56Updated last year
- Parsing MHC nomenclature in the wild☆18Updated 9 months ago
- Python implementation of Basic Local Alignment Search Tool (BLAST) , which is the core algorithm in sequence alignment for genomes.☆77Updated 2 years ago
- A Python tool for prediction MHC ligand☆34Updated 6 years ago
- ☆134Updated 3 years ago
- Deep learning tools and models for MALDI-TOF mass spectra analysis☆27Updated 9 months ago
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Updated 5 years ago
- Literature mining for T cell relations☆23Updated 3 years ago
- ☆13Updated last week
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- Source code for "A novel methodology on distributed representations of proteins using their interacting ligands"☆28Updated 5 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Updated 7 years ago
- Tokenizers and Machine Learning Models for biological sequence data☆25Updated last year
- Pairwise string alignment in Python (Needleman-Wunsch and Smith-Waterman algorithms)☆97Updated 7 years ago
- A Python wrapper around Clustal Omega (http://www.clustal.org/omega/)☆26Updated 3 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆21Updated 7 years ago
- 🎨 Python library to plot multi-part genetic constructs☆25Updated 8 months ago
- Draw RNA secondary structures in python.☆49Updated 6 months ago
- nucleic acid folding☆108Updated 4 months ago
- Deconvolution of RNA Alternative COnformations☆14Updated last week
- This is the public repository for the EPIC tool.☆18Updated 3 years ago
- 🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more☆45Updated 6 months ago
- Explainable AI for Bioinformatics☆126Updated 2 years ago
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago