Alternatives and similar repositories for pyalign

Users that are interested in pyalign are comparing it to the libraries listed below

• jmschrei / ledidi
  Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
  ☆95Updated 5 months ago
• ahoarfrost / fastBio
  Deep learning library for biological sequences. Extension of Fastai and Pytorch.
  ☆39Updated 5 months ago
• HallLab / pandas-genomics
  Pandas ExtensionDtypes for dealing with genomics data
  ☆47Updated 5 months ago
• scastlara / minineedle
  Needleman-Wunsch and Smith-Waterman algorithms in python
  ☆47Updated last year
• p3732 / gpumap
  GPU-Parallelized UMAP
  ☆52Updated 6 years ago
• dnbaker / bioseq
  Tokenizers and Machine Learning Models for biological sequence data
  ☆25Updated last year
• dhimmel / obonet
  OBO-formatted ontologies → networkx (Python 3)
  ☆148Updated 7 months ago
• usnistgov / lantern
  Interpretable genotype-phenotype landscape modeling
  ☆36Updated last year
• Zsailer / phylopandas
  Pandas DataFrames for phylogenetics
  ☆74Updated 4 years ago
• lvrcek / GNNome-assembly
  Learning to untangle genome assembly with graph neural networks.
  ☆72Updated 11 months ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆66Updated 7 months ago
• kundajelab / simdna
  A python library for creating simulated regulatory DNA sequences
  ☆39Updated 2 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 3 years ago
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆34Updated last year
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆42Updated 5 years ago
• brentp / interlap
  fast, pure-python interval overlap testing
  ☆52Updated 5 years ago
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 4 years ago
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 5 years ago
• Novartis / peax
  Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…
  ☆68Updated 2 years ago
• pirl-unc / mhcgnomes
  Parsing MHC nomenclature in the wild
  ☆18Updated 7 months ago
• ncbi / BioConceptVec
  ☆42Updated 5 years ago
• biopragmatics / bioregistry
  📮 An integrative registry of biological databases, ontologies, and nomenclatures.
  ☆137Updated last week
• dvklopfenstein / pmidcite
  Download "Cited by" data from the NIH for any paper with a PubMed ID
  ☆32Updated 2 months ago
• hetio / hetmatpy
  Python package for matrix storage and operations on hetnets
  ☆15Updated 2 years ago
• bio-tools / biotoolsRegistry
  biotoolsregistry: discovery portal for bioinformatics
  ☆81Updated last week
• johnbachman / famplex
  Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.
  ☆12Updated 4 years ago
• jbloomlab / alignparse
  Align sequences and then parse features.
  ☆17Updated 3 weeks ago
• hammerlab / t-cell-relation-extraction
  Literature mining for T cell relations
  ☆23Updated 3 years ago
• jwillis0720 / sadie
  The Complete Python Antibody Library
  ☆24Updated last week