Alternatives and similar repositories for pyalign

Users that are interested in pyalign are comparing it to the libraries listed below

• jmschrei / ledidi
  Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
  ☆92Updated 4 months ago
• ahoarfrost / fastBio
  Deep learning library for biological sequences. Extension of Fastai and Pytorch.
  ☆39Updated 4 months ago
• Zsailer / phylopandas
  Pandas DataFrames for phylogenetics
  ☆74Updated 4 years ago
• scastlara / minineedle
  Needleman-Wunsch and Smith-Waterman algorithms in python
  ☆47Updated last year
• dhimmel / obonet
  OBO-formatted ontologies → networkx (Python 3)
  ☆146Updated 6 months ago
• HallLab / pandas-genomics
  Pandas ExtensionDtypes for dealing with genomics data
  ☆47Updated 4 months ago
• usnistgov / lantern
  Interpretable genotype-phenotype landscape modeling
  ☆35Updated last year
• Edinburgh-Genome-Foundry / Caravagene
  🎨 Python library to plot multi-part genetic constructs
  ☆25Updated 6 months ago
• biopragmatics / bioregistry
  📮 An integrative registry of biological databases, ontologies, and nomenclatures.
  ☆137Updated this week
• Edinburgh-Genome-Foundry / python_codon_tables
  Codon usage tables in code-friendly format + Python bindings
  ☆39Updated 5 months ago
• dnbaker / bioseq
  Tokenizers and Machine Learning Models for biological sequence data
  ☆25Updated last year
• Global-Biofoundries-Alliance / SynBioPython
  General low-level API
  ☆50Updated 3 years ago
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 4 years ago
• modernatx / seqlike
  Unified biological sequence manipulation in Python
  ☆207Updated last year
• p3732 / gpumap
  GPU-Parallelized UMAP
  ☆52Updated 6 years ago
• pirl-unc / mhcgnomes
  Parsing MHC nomenclature in the wild
  ☆18Updated 6 months ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 3 years ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆66Updated 6 months ago
• Novartis / peax
  Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…
  ☆68Updated 2 years ago
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated 2 years ago
• dmnfarrell / pybioviz
  bioinformatics visualization tools with pyviz/bokeh
  ☆20Updated 2 years ago
• OntoGene / OGER
  ☆24Updated 4 years ago
• joanaapa / Distillation-DNABERT-Promoter
  Knowledge distillation on DNABERT (DistilBERT and MiniLM techniques) for promoter identification.
  ☆24Updated 2 years ago
• ehsanasgari / Deep-Proteomics
  ☆51Updated 5 years ago
• kundajelab / simdna
  A python library for creating simulated regulatory DNA sequences
  ☆39Updated 2 years ago
• jwillis0720 / sadie
  The Complete Python Antibody Library
  ☆24Updated 2 months ago
• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆57Updated last week
• BIMSBbioinfo / janggu
  Deep learning infrastructure for genomics
  ☆257Updated 4 years ago
• kuleshov / gwaskb
  Machine-curated database of genetic disease and genome-wide association studies
  ☆57Updated 6 years ago
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆44Updated 2 months ago