Alternatives and similar repositories for pyalign:

Users that are interested in pyalign are comparing it to the libraries listed below

• ahoarfrost / fastBio
  Deep learning library for biological sequences. Extension of Fastai and Pytorch.
  ☆40Updated last month
• jmschrei / ledidi
  Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
  ☆71Updated 2 months ago
• HallLab / pandas-genomics
  Pandas ExtensionDtypes for dealing with genomics data
  ☆47Updated 4 months ago
• ljdursi / poapy
  A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes
  ☆73Updated 9 months ago
• Ad115 / EnsemblRest
  A Python interface to the Ensembl REST APIs, biological data at your fingertips.
  ☆11Updated 11 months ago
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 3 years ago
• ml-jku / DNA-xLSTM
  ☆13Updated 4 months ago
• dnbaker / bioseq
  Tokenizers and Machine Learning Models for biological sequence data
  ☆25Updated 6 months ago
• cansyl / DEEPred
  ☆25Updated 2 years ago
• lvrcek / GNNome-assembly
  Learning to untangle genome assembly with graph neural networks.
  ☆72Updated 4 months ago
• benchling / clustalo-python
  A Python wrapper around Clustal Omega (http://www.clustal.org/omega/)
  ☆22Updated 3 years ago
• jeffdaily / parasail-python
  Python bindings for the parasail C library.
  ☆99Updated 6 months ago
• dmnfarrell / pybioviz
  bioinformatics visualization tools with pyviz/bokeh
  ☆20Updated last year
• ncbi / BioConceptVec
  ☆41Updated 5 years ago
• pirl-unc / mhcgnomes
  Parsing MHC nomenclature in the wild
  ☆16Updated last week
• mlf-core / mlf-core
  CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.
  ☆45Updated 2 years ago
• 1edv / evolution
  This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
  ☆94Updated last year
• biosustain / croissance
  Tool for estimating growth rates from microbial growth curves
  ☆28Updated 3 years ago
• spetti / SMURF
  ☆131Updated 2 years ago
• Edinburgh-Genome-Foundry / Caravagene
  🎨 Python library to plot multi-part genetic constructs
  ☆25Updated last year
• Zsailer / phylopandas
  Pandas DataFrames for phylogenetics
  ☆73Updated 3 years ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆43Updated 5 years ago
• Pex2892 / PETAL
  PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis
  ☆35Updated 2 years ago
• kundajelab / simdna
  A python library for creating simulated regulatory DNA sequences
  ☆38Updated 2 years ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆23Updated 3 weeks ago
• dhimmel / obonet
  OBO-formatted ontologies → networkx (Python 3)
  ☆137Updated last week
• krassowski / easy-entrez
  Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …
  ☆77Updated last year
• leonweber / pedl
  Search the biomedical literature for protein interactions and protein associations
  ☆11Updated last year
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆80Updated 2 years ago
• gosling-lang / gos
  A declarative interactive genomics visualization library for Python.
  ☆224Updated 2 months ago