Alternatives and similar repositories for pairwise-alignment-in-python

Users that are interested in pairwise-alignment-in-python are comparing it to the libraries listed below

• brentp / cruzdb
  python access to UCSC genomes database
  ☆136Updated 5 years ago
• mbreese / swalign
  Smith-Waterman local aligner
  ☆72Updated 3 years ago
• DaehwanKimLab / hisat
  Fast spliced aligner with low memory requirements
  ☆41Updated 10 years ago
• bxlab / bx-python
  Tools for manipulating biological data, particularly multiple sequence alignments
  ☆159Updated last month
• gifford-lab / Keras-genomics
  Perform hyper-parameter tuning, training, testing and prediction with Keras
  ☆44Updated 7 years ago
• noporpoise / seq-align
  Fast, portable C implementations of Needleman-Wunsch and Smith-Waterman sequence alignment
  ☆97Updated 4 years ago
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆83Updated 2 months ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆47Updated 9 years ago
• brentp / align
  sequence alignment. global, local, glocal.
  ☆42Updated 9 years ago
• gui11aume / starcode
  All pairs search and sequence clustering
  ☆98Updated 3 years ago
• brentp / pyfasta
  fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
  ☆86Updated 8 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆85Updated last year
• mdshw5 / fastqp
  Simple FASTQ quality assessment using Python
  ☆109Updated 4 years ago
• boutroslab / cld
  A software for the multispecies design of CRISPR/Cas9 libraries
  ☆36Updated 3 years ago
• mitenjain / nanopore
  UCSC Nanopore group's software pipeline for reference-based sequence analysis
  ☆55Updated 10 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 2 months ago
• hyeshik / poreplex
  A versatile sequenced read processor for nanopore direct RNA sequencing
  ☆82Updated 5 years ago
• mourisl / Lighter
  Fast and memory-efficient sequencing error corrector
  ☆94Updated 3 weeks ago
• gmcvicker / genome
  Python library and scripts for retrieval and storage of genomics data in HDF5 format
  ☆27Updated 6 years ago
• haotianteng / Chiron
  A basecaller for Oxford Nanopore Technologies' sequencers
  ☆121Updated 2 years ago
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 4 years ago
• jordisr / poreover
  Nanopore basecalling and consensus decoding
  ☆46Updated 3 years ago
• melbournebioinformatics / variant_calling_pipeline
  A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…
  ☆34Updated 11 years ago
• Ensembl / ensembl-pipeline
  *DEPRECATED* Job management for the Ensembl Genebuild pipeline
  ☆63Updated last year
• CGATOxford / cgat
  Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps
  ☆124Updated 7 years ago
• mateidavid / nanocall
  An Oxford Nanopore Basecaller
  ☆70Updated 4 years ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆67Updated 10 months ago
• aldro61 / kover
  Learn interpretable computational phenotyping models from k-merized genomic data
  ☆52Updated 3 years ago
• zhaoyanswill / RAPSearch2
  Reduced Alphabet based Protein similarity Search
  ☆40Updated 5 years ago
• lucapinello / Haystack
  Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
  ☆31Updated 8 years ago