Pairwise string alignment in Python (Needleman-Wunsch and Smith-Waterman algorithms)
☆97Apr 13, 2018Updated 8 years ago
Alternatives and similar repositories for pairwise-alignment-in-python
Users that are interested in pairwise-alignment-in-python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Needleman-Wunsch and Smith-Waterman algorithms in python☆50Jul 12, 2024Updated 2 years ago
- Implementation of Needleman-Wunsch algorithm in Python Using Nested Functions.☆13Jul 10, 2018Updated 8 years ago
- Fast pairwise sequence alignment using SeqAn, in Python.☆13Mar 23, 2019Updated 7 years ago
- SAMtools: A Primer☆13Dec 19, 2014Updated 11 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Implementation of needleman wunsch algorithm for global sequence alignment☆10Mar 2, 2019Updated 7 years ago
- A shell script which implements GATK pipeline for variant calling.☆15Nov 30, 2014Updated 11 years ago
- ☆13Jun 5, 2015Updated 11 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 11 months ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 7 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆15Updated this week
- A library for next generation genomics in Python 3☆18Jun 7, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Codebase for the domain adaptation (cross-species TF binding prediction) project.☆12Aug 29, 2022Updated 3 years ago
- A CLI for pairwise alignment of sequences, using both normal and mass based alignment.☆17Jun 3, 2026Updated last month
- CHANGE-seq analysis pipeline☆12Dec 18, 2025Updated 7 months ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆19May 6, 2019Updated 7 years ago
- CRISPR Cas9 ontarget prediction software☆34Jul 14, 2026Updated last week
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 10 years ago
- annotation pipeline for microbial genomes and metagenomes☆18Feb 23, 2018Updated 8 years ago
- A basic implementation of the UPGMA (Unweighted Pair Group Method with Arithmetic Mean) clustering algorithm in Python.☆13Dec 11, 2015Updated 10 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A collection of bioinformatics algorithms☆12Aug 20, 2022Updated 3 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated last year
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.☆12Feb 14, 2023Updated 3 years ago
- ☆16Jun 29, 2026Updated 3 weeks ago
- Proteins as words, genomes as documents.☆19Nov 11, 2020Updated 5 years ago
- ☆19Mar 21, 2024Updated 2 years ago
- Python interface for SIMD Smith-Waterman Library☆37May 18, 2022Updated 4 years ago
- Fast multi-line FASTA/Q reader in several programming languages☆177Jun 6, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Make phylogenetic trees and lineages from the NCBI Taxonomy database☆14Mar 19, 2023Updated 3 years ago
- A data processing platform for ChIP-seq, RNA-seq, MNase-seq, DNase-seq, ATAC-seq and GRO-seq datasets. Please ignore information on ciphe…☆19Dec 22, 2017Updated 8 years ago
- An Expectation-Maximization algorithm to infer mutational signatures☆27Nov 16, 2016Updated 9 years ago
- kaamer - protein identification based on amino acid kmers☆11Mar 7, 2023Updated 3 years ago
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 5 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆79Dec 5, 2023Updated 2 years ago