StochKit is an extensible tool for stochastic simulation tool with stochastic and multiscale algorithms.
☆17Jun 9, 2020Updated 6 years ago
Alternatives and similar repositories for StochKit
Users that are interested in StochKit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a C library for symbolic and numerical analysis of a system of ordinary differential equations (ODEs) derived from a chemical reaction ne…☆24Mar 15, 2018Updated 8 years ago
- SODECL is a library of ordinary differential equation (ODE) and stochastic differential equation (SDE) solvers in OpenCL.☆11Jul 4, 2020Updated 5 years ago
- Draw genetic elements with HTML & CSS☆17May 6, 2026Updated last month
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- Particle Swarm Optimization algorithm in Python☆14Apr 23, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Parameter estimation and model calibration using Genetic Algorithm optimization in Python.☆12Aug 16, 2024Updated last year
- Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module☆23Jan 27, 2022Updated 4 years ago
- StochSS - Software as a Service for modeling, simulation, inference and analysis of biochemical models. https://live.stochss.se☆25Jan 28, 2026Updated 5 months ago
- Cross Modality Optimal Transport for multimodal inference☆10Nov 29, 2024Updated last year
- Repository for the T2D/obesity experiments run in the Metapheno paper☆15Feb 6, 2019Updated 7 years ago
- User-submitted RNA-seq data analysis tools for BioJupies.☆20Jul 16, 2025Updated 11 months ago
- DeepContact Software☆26Jun 16, 2018Updated 8 years ago
- Python + Tensorflow code for the Master's thesis: Deep Generative Models for Predicting Alzheimer's Disease Progression from MR Data☆10Jan 5, 2018Updated 8 years ago
- The matching routine for interologs identification based on co-evolution☆11Jul 17, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Improved contact predictions using the recognition of protein like contact patterns.☆14May 18, 2018Updated 8 years ago
- Multi-scale Anomaly Detection on Attributed Networks☆14Dec 3, 2021Updated 4 years ago
- iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importin…☆66Apr 7, 2026Updated 2 months ago
- Opal is a toolkit for that enables rapid deployment of scientific applications as Web services☆12Jul 11, 2022Updated 3 years ago
- Example of project structure for a C++ project with cmake☆25Oct 9, 2018Updated 7 years ago
- Conditional Constrained Graph Variational Autoencoders (CCGVAE) for Molecule Design☆22Sep 20, 2020Updated 5 years ago
- Simple microcanonical Molecular Dynamics simulation of a Lennard-Jones fluid in a periodic boundary☆10Jan 2, 2018Updated 8 years ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Nov 18, 2018Updated 7 years ago
- ☆15Nov 10, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- kIPC - Inter-Process(or) Communication for kOS and kRPC in KSP☆15Nov 11, 2018Updated 7 years ago
- Template-based C++ wrapper for HDF5 library☆25Mar 17, 2026Updated 3 months ago
- Pipeline for protein folding using PconsC and Rosetta☆18May 21, 2018Updated 8 years ago
- The implementation of the algorithm proposed in A Principled Massive-Graph Similarity Function, and improvement of this algorith.☆15Nov 12, 2016Updated 9 years ago
- Convert an integer factorization problem into a boolean SATISFIABILITY problem.☆10Jan 14, 2019Updated 7 years ago
- Automated Cell Toolkit☆24Oct 15, 2025Updated 8 months ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆56Jul 27, 2023Updated 2 years ago
- NLA-NU Kazakh Dependency Treebank☆10Dec 23, 2018Updated 7 years ago
- IPython Integration into Galaxy☆31Jan 22, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Implementation of "Generative Modeling for Protein Structures" by Namrata Anand and Po-Ssu Huang☆18Sep 8, 2021Updated 4 years ago
- LLEA (Low-Level Engine for Astrodynamics) a modern Fortran astrodynamics library☆17May 21, 2017Updated 9 years ago
- Rust SDK for Rigetti Quantum Cloud Services (QCS)☆15May 27, 2026Updated last month
- ☆13Jul 28, 2025Updated 11 months ago
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆24Jul 6, 2023Updated 2 years ago
- ☆23May 1, 2025Updated last year
- Command-line utility to return Zotero record field values given a Zotero select link, an item key, or even just a file attachment☆10Dec 23, 2023Updated 2 years ago