StochSS / StochKitLinks
StochKit is an extensible tool for stochastic simulation tool with stochastic and multiscale algorithms.
☆16Updated 5 years ago
Alternatives and similar repositories for StochKit
Users that are interested in StochKit are comparing it to the libraries listed below
Sorting:
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last month
- Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module☆22Updated 3 years ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- The official PySCeS project source code repository.☆38Updated last month
- Python framework for multi-parameter optimization and evaluation of protein folding models☆17Updated 4 years ago
- Modeling toolkit for biochemical simulation☆74Updated 5 months ago
- Python package for stochastic simulations☆17Updated 2 weeks ago
- Rule-based modeling framework☆64Updated 3 weeks ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆17Updated last year
- Symbolic Kinetic Models with Python☆33Updated 3 weeks ago
- ☆24Updated 2 years ago
- C++ Accelerated Python Diffusion Maps Library☆23Updated 6 years ago
- Software tool for metabolic modelling in Systems Biology☆10Updated 4 years ago
- Improved contact predictions using the recognition of protein like contact patterns.☆14Updated 7 years ago
- Python Environment for Modeling and Simulating Biological Systems☆118Updated 2 weeks ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆24Updated 5 years ago
- JBEI Quantitative Metabolic Modeling library☆12Updated 5 years ago
- Interpretable genotype-phenotype landscape modeling☆35Updated last year
- ☆36Updated 5 years ago
- cy3sbml: SBML for Cytoscape 3☆14Updated this week
- localCIDER - sequence analysis tool for disordered protein sequences☆23Updated 2 years ago
- Pseudo Likelihood Maximization for protein in Julia☆51Updated last month
- libRoadRunner: A high-performance SBML simulator☆50Updated this week
- Gillespie Stochastic Simulation Algorithm☆14Updated 11 years ago
- Python utilities for SBML☆41Updated 3 weeks ago
- A primer on statistical mechanics for biochemists☆46Updated 2 years ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago