StochSS / StochKitLinks
StochKit is an extensible tool for stochastic simulation tool with stochastic and multiscale algorithms.
☆17Updated 5 years ago
Alternatives and similar repositories for StochKit
Users that are interested in StochKit are comparing it to the libraries listed below
Sorting:
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- The official PySCeS project source code repository.☆39Updated last month
- Rule-based modeling framework☆65Updated 6 months ago
- Modeling toolkit for biochemical simulation☆81Updated 10 months ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 5 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated 2 months ago
- Python framework for multi-parameter optimization and evaluation of protein folding models☆17Updated 4 years ago
- Python Environment for Modeling and Simulating Biological Systems☆128Updated last week
- libChEBIpy: a Python API for accessing the ChEBI database☆24Updated 3 months ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆117Updated last week
- Statistical models for biomolecular dynamics☆160Updated 4 years ago
- The Integrative Modeling Platform☆79Updated this week
- Open Source Protein REdesign for You v3☆56Updated last month
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated last year
- Python utilities for SBML☆41Updated last month
- Automated omics-scale protein modeling and simulation setup.☆53Updated 4 years ago
- ☆31Updated 4 years ago
- C++ implementation of the Diffusion Map, with Python bindings☆10Updated 8 years ago
- 2D and 3D molecular visualization in Jupyter notebooks using 3DMol.js and D3.js☆83Updated 7 years ago
- WebGL based molecular viewer☆36Updated last month
- CompuCell3D public source code repository☆77Updated last week
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last week
- 🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)☆137Updated last year
- Molecular Query Language☆35Updated last year
- Modeling and Bayesian analysis of fluorescence and absorbance assays.☆20Updated 4 years ago
- libRoadRunner: A high-performance SBML simulator☆55Updated last week
- localCIDER - sequence analysis tool for disordered protein sequences☆25Updated 2 years ago
- The python implementation of the MMTF API, decoder and encoder.☆46Updated 3 years ago
- LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…☆54Updated last week