Alternatives and similar repositories for biojava

Users that are interested in biojava are comparing it to the libraries listed below

• blachlylab / mucor
  ☆12Updated 8 years ago
• DarwinAwardWinner / CD4-csaw
  Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set
  ☆16Updated 5 years ago
• your-highness / normR
  Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.
  ☆11Updated 3 years ago
• roryk / bcbio.rnaseq
  Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …
  ☆24Updated 7 years ago
• josephryan / sowhat
  Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)
  ☆11Updated last year
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆22Updated 8 years ago
• ma-compbio / Weaver
  Allele-Specific Quantification of Structural Variations in Cancer Genomes
  ☆17Updated 6 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 5 years ago
• raphael-group / NAIBR
  Novel Adjacency Identification with Barcoded Reads
  ☆13Updated 3 years ago
• statOmics / stageR
  stageR package
  ☆12Updated 2 years ago
• ernfrid / diagnose_dups
  A tool to examine duplicate read characteristics in a BAM file
  ☆12Updated 7 years ago
• clintval / cvbio
  Artisanal 🤣 bioinformatics tools and pipelines in Scala
  ☆20Updated 5 years ago
• wejlab / MetaScope
  An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)
  ☆19Updated last week
• bschiffthaler / kogia
  Docker containers for bioinformatics with a small footprint
  ☆23Updated last year
• koelling / dnacol
  Color DNA/RNA bases in terminal output
  ☆21Updated 7 years ago
• galaxyproject / cargo-port
  cache packages permanently
  ☆14Updated 10 months ago
• TGAC / RAMPART
  A configurable de novo assembly pipeline
  ☆28Updated 8 years ago
• natir / vcf2parquet
  Convert vcf in parquet
  ☆26Updated 3 months ago
• mjsull / HapFlow
  Visualise interstrain recombination from environmental samples.
  ☆26Updated 6 years ago
• DCGenomics / DangerTrack
  ☆13Updated 7 years ago
• mskilab-org / pgv
  Pan gGnome Viewer
  ☆10Updated last year
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 5 years ago
• nickloman / poredb
  ☆19Updated 8 years ago
• vsbuffalo / qrqc
  Quick Read Quality Control
  ☆20Updated 2 years ago
• Bioconductor / UseBioconductor
  Training material for intermediate R / Bioconductor courses
  ☆17Updated 2 years ago
• miRTop / mirtop
  command lines tool to annotate miRNAs with a standard mirna/isomir naming
  ☆18Updated 2 weeks ago
• nickloman / ebov
  Ebola virus surveillance
  ☆16Updated 8 years ago
• usnistgov / SVClassify
  Hemang Parikh
  ☆11Updated 9 years ago
• lamortenera / bamsignals
  R package to quickly obtain count vectors from indexed bam files
  ☆15Updated 3 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago