sbliven / biojava
DO NOT FORK! This repository is outdated. It is only kept as a reference for old forks. Create a clean clone from https://github.com/biojava/biojava
☆29Updated 11 years ago
Alternatives and similar repositories for biojava:
Users that are interested in biojava are comparing it to the libraries listed below
- tool to Identify TE Insertion Sites in genome☆9Updated 7 years ago
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11Updated 10 months ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Updated 3 years ago
- Convert vcf in parquet☆26Updated last month
- command lines tool to annotate miRNAs with a standard mirna/isomir naming☆18Updated 3 months ago
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)☆16Updated last month
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 2 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆10Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Updated 4 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Clonal reconstruction from HTS data☆10Updated 3 years ago
- ☆11Updated 3 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set☆16Updated 5 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 8 months ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 4 years ago
- CLI to automate Nextflow pipeline testing☆12Updated 3 months ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago
- ☆10Updated 12 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- GUI for batch primer design with graphical output for PCR and SNP detection☆17Updated 6 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- high-throughput primer design and graphical visualization☆9Updated 7 years ago
- Tools for generating and decoding error-correcting DNA barcodes☆16Updated 3 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Updated 5 years ago
- Pan gGnome Viewer☆10Updated last year
- Rust wrapper for STAR aligner☆16Updated last week