sallyqus / awesome-AI4SingleCellLinks
Must-read papers on deep learning based methodology paper for single cell data analysis
☆19Updated 4 years ago
Alternatives and similar repositories for awesome-AI4SingleCell
Users that are interested in awesome-AI4SingleCell are comparing it to the libraries listed below
Sorting:
- ☆121Updated 6 months ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆146Updated last year
- Single-cell ATAC-seq analysis via Latent feature Extraction☆103Updated 2 years ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆100Updated 3 months ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆111Updated 2 months ago
- PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).☆61Updated 3 weeks ago
- Predict RNA velocity through deep learning☆71Updated 2 years ago
- Multi-omic velocity inference☆113Updated last year
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆79Updated 3 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆146Updated 2 years ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆156Updated 10 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆94Updated last year
- a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …☆129Updated 2 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆92Updated last month
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆97Updated 4 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆149Updated last year
- R package to access DoRothEA's regulons☆152Updated last year
- A tool for semi-automatic cell type harmonization and integration☆117Updated last month
- ☆59Updated this week
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆56Updated 6 months ago
- ☆131Updated 2 years ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆46Updated 2 years ago
- ☆44Updated last year
- ☆46Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆122Updated this week
- A benchmark of batch-effect correction methods for single-cell RNA sequencing data☆79Updated 3 years ago
- Python implementation of the Slingshot pseudotime algorithm☆69Updated last month
- Test genes for Spatial Variation☆178Updated last year
- Benchmarking computational single cell ATAC-seq methods☆185Updated 5 years ago