Must-read papers on deep learning based methodology paper for single cell data analysis
☆19Apr 18, 2021Updated 4 years ago
Alternatives and similar repositories for awesome-AI4SingleCell
Users that are interested in awesome-AI4SingleCell are comparing it to the libraries listed below
Sorting:
- Scripts associated with the 2023 Open Problems competition☆11Nov 23, 2023Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 4 years ago
- ☆34Jun 7, 2019Updated 6 years ago
- The OKX Solana Accelerate Hackathon challenges developers to build innovative DeFi applications using the OKX DEX API on Solana.☆13May 15, 2025Updated 9 months ago
- ☆10Dec 4, 2023Updated 2 years ago
- PDBClean helps create a curated ensemble of molecular structures☆16Feb 20, 2026Updated 2 weeks ago
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆12Oct 16, 2025Updated 4 months ago
- 这是一个自动抓取和展示GIS相关学术期刊最新文章的系统。系统会定期从设定的RSS源获取最新文章,并提供中英文双语展示。☆10Jan 14, 2025Updated last year
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Sep 3, 2019Updated 6 years ago
- Utility tools for for anybody interested in using a familiar tool (R) in setting up Zonation runs and managing Zonation results.☆14May 18, 2020Updated 5 years ago
- Analysis on stop reasons☆10Jun 17, 2024Updated last year
- Models and datasets for perturbational single-cell omics☆173Aug 19, 2022Updated 3 years ago
- Unbiased single-cell transcriptomic data cell type identification☆14May 7, 2024Updated last year
- SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data☆10Dec 3, 2025Updated 3 months ago
- Cellular content mining and particle localization☆10Sep 21, 2025Updated 5 months ago
- Chinese Multi-omics Advances In Sepsis☆15Dec 29, 2025Updated 2 months ago
- Flexible XML to dict Converter☆11Jan 20, 2020Updated 6 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆17Feb 28, 2026Updated last week
- A Teaching Engine for Genomics☆12Mar 21, 2021Updated 4 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Sep 10, 2024Updated last year
- ☆15Feb 6, 2026Updated last month
- Code for the paper "ZHEClean: Cleaning Dirty Knowledge Graphs using Zero Human-labeled Examples"☆10Jul 23, 2021Updated 4 years ago
- 中国科学技术大学-微软亚洲研究院创新实践项目 医学文献翻译组☆12May 26, 2021Updated 4 years ago
- Integrative protein sequence design with evolutionary multiobjective optimization.☆12Jul 16, 2024Updated last year
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Feb 7, 2022Updated 4 years ago
- Python CLI for alignment-free genomics.☆13Feb 11, 2026Updated 3 weeks ago
- Workshop on Synergizing Biomedical Ontologies, July 14-16 (Virtual)☆12Aug 6, 2021Updated 4 years ago
- A library for GNU make to schedule rules as jobs with qsub or sbatch☆11Mar 7, 2013Updated 13 years ago
- ☆10Apr 28, 2023Updated 2 years ago
- An R package for creating 3D barplots☆12Jan 8, 2023Updated 3 years ago
- scNMT-seq gastrulation☆42Feb 8, 2023Updated 3 years ago
- Lightweight C++ library for reading FASTA and FASTQ files.☆11Feb 16, 2019Updated 7 years ago
- Pipeline for lncRNA, Circular RNA, and novel mRNA identification.☆11May 5, 2023Updated 2 years ago
- Scripts supporting identification of genomic features affecting survival time in cancer☆12Dec 6, 2018Updated 7 years ago
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Jul 27, 2020Updated 5 years ago
- Code and analysis for the 1000 tools paper☆11Nov 12, 2021Updated 4 years ago
- ☆14May 15, 2024Updated last year
- Graphical modelling with time series data using an ODE model☆12Mar 28, 2022Updated 3 years ago
- TransDTI: Transformer-based language models for estimating DTIs and building a drug-recommendation workflow☆13Oct 26, 2022Updated 3 years ago