MarioniLab / Aneuploidy2017Links
Supplementary files for our Aneuploidy Detection paper
☆10Updated 7 years ago
Alternatives and similar repositories for Aneuploidy2017
Users that are interested in Aneuploidy2017 are comparing it to the libraries listed below
Sorting:
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆52Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆29Updated 5 years ago
- Immunology-related bioinformatics data and tools☆76Updated last year
- ☆34Updated 6 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 8 years ago
- ☆120Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆58Updated last month
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 9 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated 2 weeks ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 2 months ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Tutorial Website☆60Updated 4 years ago
- ☆62Updated 5 years ago
- ☆68Updated 2 years ago
- ☆91Updated 5 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆117Updated 5 months ago
- ☆44Updated 7 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆38Updated last year
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017