Alternatives and similar repositories for Protein_Sequence_Classification

Users that are interested in Protein_Sequence_Classification are comparing it to the libraries listed below

• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆75Updated 5 years ago
• stamakro / GCN-for-Structure-and-Function
  Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"
  ☆41Updated 2 years ago
• Rostlab / goPredSim
  ☆49Updated last year
• nstrodt / UDSMProt
  Protein sequence classification with self-supervised pretraining
  ☆82Updated 4 years ago
• RafsanjaniHub / PyFeat
  A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
  ☆97Updated 3 years ago
• dmis-lab / tbinet
  TBiNet: A deep neural network for predicting transcription factor binding sites using attention mechanism
  ☆25Updated 4 years ago
• arontier / A_Prot_Paper
  A Prot paper related materials
  ☆10Updated 3 years ago
• ehsanasgari / DeepPrime2Sec
  ☆26Updated 3 years ago
• alrojo / UniLanguage
  Homology reduced UniProt, train-/valid-/testsets for language modeling
  ☆16Updated 3 years ago
• yarongef / DistilProtBert
  DistilProtBert implementation, a distilled version of ProtBert model.
  ☆15Updated 3 years ago
• jertubiana / ProteinMotifRBM
  Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
  ☆20Updated 6 years ago
• tadorfer / protlearn
  A Python package for extracting protein sequence features
  ☆62Updated 3 years ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆34Updated 3 months ago
• cansyl / DEEPred
  ☆25Updated 3 years ago
• Superzchen / iFeatureOmega-GUI
  iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…
  ☆31Updated 3 years ago
• hkmztrk / SMILESVecProteinRepresentation
  Source code for "A novel methodology on distributed representations of proteins using their interacting ligands"
  ☆28Updated 5 years ago
• john-bradshaw / ml-in-bioinformatics-summer-school-2020
  Tutorial for "Advances in machine learning for molecules" (for Summer School for Machine Learning in Bioinformatics, https://cs.hse.ru/ss…
  ☆21Updated 5 years ago
• elbasir / DeepCrystal
  DeepCrystal: A Deep Learning Framework for sequence-based Protein Crystallization Prediction
  ☆18Updated 2 months ago
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• QData / ChromeGCN
  Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification
  ☆33Updated 4 years ago
• amyxlu / CPCProt
  Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.
  ☆30Updated 5 months ago
• lucian-ilie / DELPHI
  Deep learning protein-protein binding sites prediction
  ☆22Updated 2 years ago
• ProteinQure / cbh21-protein-solubility-challenge
  Template with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinfor…
  ☆22Updated 4 years ago
• LinearFold / LinearPartition
  Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities
  ☆33Updated last year
• Bonidia / MathFeature
  Feature Extraction Package for Biological Sequences
  ☆65Updated last month
• yanzhanglab / Graph2GO
  Graph-based representation learning method for protein function prediction
  ☆24Updated 4 months ago
• BioSystemsUM / propythia
  Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical pro…
  ☆34Updated 2 years ago
• bio-ontology-research-group / deepgo
  Function prediction using a deep ontology-aware classifier
  ☆85Updated 3 years ago
• IdoSpringer / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆18Updated 3 years ago
• tadorfer / nlprot
  NLP for Proteins - A paper collection
  ☆13Updated 5 years ago