Alternatives and similar repositories for ChromeGCN

Users that are interested in ChromeGCN are comparing it to the libraries listed below

• bio-ontology-research-group / deepgo
  Function prediction using a deep ontology-aware classifier
  ☆85Updated 3 years ago
• HarveyYan / RNAonGraph
  A repository for neural representational learning of RNA secondary structures
  ☆32Updated 5 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 4 years ago
• pth1993 / DeepCE
  A deep learning framework for high-throughput mechanism-driven phenotype screening
  ☆52Updated 4 years ago
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆75Updated 5 years ago
• bio-ontology-research-group / deepgoplus
  DeepGO with GOPlus axioms
  ☆100Updated 2 months ago
• baranwa2 / MetabolicPathwayPrediction
  ☆37Updated 2 years ago
• snap-stanford / multiscale-interactome
  ☆72Updated 2 years ago
• HannesStark / protein-localization
  Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…
  ☆75Updated 2 years ago
• cmap / cmapPy
  Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
  ☆136Updated 3 years ago
• Rostlab / goPredSim
  ☆49Updated last year
• menchelab / MultiOme
  Network-based project to explore gene connectivity through biological scales
  ☆23Updated last year
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆49Updated 6 months ago
• RafsanjaniHub / PyFeat
  A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
  ☆97Updated 3 years ago
• 1edv / evolution
  This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
  ☆96Updated 2 years ago
• PaccMann / paccmann_predictor
  PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…
  ☆54Updated 4 months ago
• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆36Updated 2 years ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆111Updated 3 years ago
• kimmo1019 / DeepCDR
  Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network
  ☆98Updated 2 years ago
• bio-ontology-research-group / deepgozero
  DeepGO with Fuzzy DL
  ☆31Updated 3 years ago
• brianhie / viral-mutation
  Language modeling of viral evolution
  ☆147Updated 2 years ago
• emreg00 / toolbox
  Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)
  ☆113Updated 3 years ago
• hashemifar / DPPI
  A convolutional neural network to predict PPI interactions
  ☆42Updated 7 years ago
• hendrixlab / bpRNA
  bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure
  ☆50Updated 2 years ago
• stamakro / GCN-for-Structure-and-Function
  Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"
  ☆41Updated 2 years ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆50Updated last year
• tadorfer / protlearn
  A Python package for extracting protein sequence features
  ☆62Updated 3 years ago
• Tsedao / MultiRM
  [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …
  ☆32Updated 4 years ago
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆42Updated last year
• JaesikKim / HiG2Vec
  ☆23Updated 2 years ago