Alternatives and similar repositories for ChromeGCN

Users that are interested in ChromeGCN are comparing it to the libraries listed below

• bio-ontology-research-group / deepgo
  Function prediction using a deep ontology-aware classifier
  ☆84Updated 2 years ago
• HarveyYan / RNAonGraph
  A repository for neural representational learning of RNA secondary structures
  ☆32Updated 5 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• kimmo1019 / DeepCDR
  Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network
  ☆90Updated 2 years ago
• baranwa2 / MetabolicPathwayPrediction
  ☆36Updated 2 years ago
• snap-stanford / multiscale-interactome
  ☆69Updated 2 years ago
• menchelab / MultiOme
  Network-based project to explore gene connectivity through biological scales
  ☆23Updated last year
• pth1993 / DeepCE
  A deep learning framework for high-throughput mechanism-driven phenotype screening
  ☆51Updated 4 years ago
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆74Updated 4 years ago
• bio-ontology-research-group / deepgoplus
  DeepGO with GOPlus axioms
  ☆98Updated 3 weeks ago
• HannesStark / protein-localization
  Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…
  ☆74Updated 2 years ago
• krishnanlab / obnb
  A Python toolkit for setting up benchmarking dataset using biomedical networks
  ☆22Updated last week
• hosseinshn / MOLI
  MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction
  ☆55Updated 5 years ago
• Rostlab / goPredSim
  ☆48Updated 11 months ago
• PaccMann / paccmann_predictor
  PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…
  ☆54Updated 3 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆36Updated 2 years ago
• schulter / EMOGI
  An explainable multi-omics graph integration method based on graph convolutional networks to predict cancer genes.
  ☆160Updated 3 years ago
• cmap / cmapPy
  Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
  ☆136Updated 3 years ago
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆42Updated last year
• alrojo / UniLanguage
  Homology reduced UniProt, train-/valid-/testsets for language modeling
  ☆16Updated 3 years ago
• JaesikKim / HiG2Vec
  ☆23Updated 2 years ago
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆93Updated 9 months ago
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆49Updated 4 months ago
• KangBoming / BulkFormer
  BulkFormer: A large-scale foundation model for human bulk transcriptomes
  ☆28Updated last month
• MachineLearningLifeScience / meaningful-protein-representations
  ☆110Updated 3 years ago
• HLTCHKUST / snp2vec
  Code and dataset for SNP2Vec paper
  ☆21Updated 2 years ago
• jingcheng-du / Gene2vec
  Gene2Vec: Distributed Representation of Genes Based on Co-Expression
  ☆125Updated 3 years ago
• AstraZeneca / skywalkR
  code for Gogleva et al manuscript
  ☆46Updated 2 years ago
• mojaie / pygosemsim
  Gene ontology (GO) semantic similarity library for Python
  ☆24Updated 7 years ago