Implementation of Protein Classification based on subcellular localization using ProtBert(Rostlab/prot_bert_bfd_localization) model from Hugging Face library, based on BERT model trained on large corpus of protein sequences.
☆43May 3, 2024Updated 2 years ago
Alternatives and similar repositories for amazon-sagemaker-protein-classification
Users that are interested in amazon-sagemaker-protein-classification are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- In this repo, we show how to host two computer vision models trained using the TensorFlow framework under one SageMaker multi-model endpo…☆12Jun 8, 2021Updated 5 years ago
- bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.☆155Oct 11, 2023Updated 2 years ago
- Clin.iobio - Workflow and reporting for iobio variant analysis pipeline☆12Oct 7, 2025Updated 9 months ago
- Multi-task and masked language model-based protein sequence embedding models.☆106Jun 16, 2021Updated 5 years ago
- Predicting protein structure through sequence modeling☆112May 4, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Sagemaker Studio Docker UI Extension☆12Apr 17, 2024Updated 2 years ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆15Sep 16, 2025Updated 10 months ago
- Code for paper "ToxIBTL: prediction of peptide toxicity based on information bottleneck and transfer learning"☆13Jan 24, 2022Updated 4 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,316May 22, 2025Updated last year
- Amino Acid Embedding Representation as Machine Learning Features☆21Aug 3, 2018Updated 7 years ago
- ☆14Jul 12, 2021Updated 5 years ago
- webserver☆30Jun 4, 2025Updated last year
- Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"☆41Jul 6, 2023Updated 3 years ago
- ☆15Oct 28, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆578Apr 7, 2026Updated 3 months ago
- AnOxPePred: Using deep learning for the prediction of antioxidative properties of peptides.☆10Dec 28, 2019Updated 6 years ago
- Protein common interface databases☆10Apr 13, 2019Updated 7 years ago
- Deep Learning tool trained on protein sequence embeddings from protein language models to accurately detect remote homologues for CATH su…☆14Jun 22, 2022Updated 4 years ago
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆20Sep 16, 2024Updated last year
- ☆17Dec 13, 2020Updated 5 years ago
- A collection of transformer-based models and developmental scripts presented in the publication "Transformers enable accurate prediction …☆18Oct 3, 2025Updated 9 months ago
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆65Mar 4, 2024Updated 2 years ago
- Google Colab notebooks for running molecular dynamics simulations with GROMACS☆49Oct 6, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This repo provides an end-to-end example of using streaming feature aggregation with the Amazon SageMaker Feature Store.☆46Jul 14, 2021Updated 5 years ago
- Protein sequence classification with self-supervised pretraining☆82Nov 29, 2021Updated 4 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆11Jun 2, 2022Updated 4 years ago
- Hosting code-server on Amazon SageMaker☆56Oct 7, 2023Updated 2 years ago
- Learning structural motif representations for efficient protein structure search☆20May 2, 2017Updated 9 years ago
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85May 31, 2022Updated 4 years ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Jun 28, 2026Updated 3 weeks ago
- A case study on Pfam dataset to classify protein families.☆32Oct 10, 2019Updated 6 years ago
- ProteinGPT: Multimodal LLM for Protein Property Prediction and Structure Understanding☆34Apr 12, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pickle decompiler plugin for Radare2☆18Aug 6, 2023Updated 2 years ago
- A package to predict protein inter-residue geometries from sequence data☆222Sep 27, 2021Updated 4 years ago
- VETA - A simple tool do evaluate variant predictors☆11Jun 17, 2024Updated 2 years ago
- Fast and accurate protein structure prediction☆58Jan 17, 2025Updated last year
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Apr 28, 2021Updated 5 years ago
- Docker container for creating and serving a custom conda repo/channel☆10Jan 23, 2018Updated 8 years ago
- ☆25Nov 14, 2025Updated 8 months ago