owkin / PyDESeq2Links
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
☆659Updated last week
Alternatives and similar repositories for PyDESeq2
Users that are interested in PyDESeq2 are comparing it to the libraries listed below
Sorting:
- Gene Set Enrichment Analysis in Python☆643Updated last month
- scripts and notebooks from sanbomics☆426Updated 7 months ago
- A tool to find sequencing data and metadata from public databases.☆580Updated 11 months ago
- PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)☆254Updated 5 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆826Updated last year
- https://www.sc-best-practices.org☆951Updated this week
- Python library to handle Gene Ontology (GO) terms☆842Updated last month
- Bioinformatics data analysis and visualization toolkit☆352Updated last year
- List of software packages for multi-omics analysis☆818Updated 2 months ago
- 10x Genomics Single Cell Analysis☆424Updated 5 months ago
- Collections of library structure and sequence of popular single cell genomic methods☆471Updated last month
- Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023☆493Updated last year
- Performant Pythonic GenomicRanges☆478Updated 4 months ago
- This is the alpha version of the CellOracle package☆366Updated 6 months ago
- A tool for semi-automatic cell type classification☆387Updated 3 weeks ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆396Updated last year
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆677Updated this week
- A list of scRNA-seq analysis tools☆712Updated last week
- RNA Velocity generalized through dynamical modeling☆451Updated 4 months ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆284Updated last month
- Reference mapping for single-cell genomics☆375Updated last month
- A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessib…☆281Updated last week
- ENCODE ATAC-seq pipeline☆425Updated 11 months ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆515Updated last week
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which …☆522Updated 3 weeks ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,063Updated last week
- TCR and BCR assembly from RNA-seq data☆316Updated last week
- A deep learning-based tool to identify splice variants☆450Updated last year
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆366Updated last week
- ☆394Updated 3 years ago