Code for paper titled, "Beyond Homology Transfer: Deep Learning for Automated Annotation of Proteins". Preprint available at: http://www.biorxiv.org/content/early/2017/07/25/168120
☆19Jul 26, 2017Updated 8 years ago
Alternatives and similar repositories for deepseq
Users that are interested in deepseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler☆24Apr 10, 2019Updated 7 years ago
- geoRge: a computational tool for stable isotope labelling detection in LC/MS-based untargeted metabolomics☆11Sep 17, 2021Updated 4 years ago
- trackc aims to produce beautiful genome tracks that are highly customizable☆18Jan 21, 2026Updated 3 months ago
- We report a section-wide NLRome for the tuber-bearing section Petota, including the most important non-cereal food crop potato. Evolution…☆20Oct 31, 2025Updated 6 months ago
- Improving protein function prediction with synthetic feature samples created by generative adversarial networks☆22Oct 6, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DeepTM: A deep learning setup for prediction of transmembrane proteins☆15Jan 2, 2018Updated 8 years ago
- A fork for the old hhsuite-2.0.16☆13Nov 27, 2020Updated 5 years ago
- GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.☆11Mar 22, 2024Updated 2 years ago
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated 2 years ago
- Multi-Teacher Distillation for Protein embedding☆12May 31, 2024Updated last year
- ☆11May 4, 2015Updated 10 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Aug 29, 2024Updated last year
- ☆51Dec 2, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- S2F: protein function without experiments☆16Nov 24, 2025Updated 5 months ago
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- Multi-object tracker using structured graphs, as proposed in the CVIU paper☆10May 23, 2018Updated 7 years ago
- ☆12May 12, 2025Updated 11 months ago
- Load Google's pre-trained Word2Vec model using gensim APIs☆13Jun 9, 2017Updated 8 years ago
- Space Object RADar SIMulator☆12May 31, 2020Updated 5 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆19Mar 23, 2020Updated 6 years ago
- ☆12May 7, 2015Updated 10 years ago
- Unsupervised neural network for learning embeddings of GO terms.☆21Feb 19, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆22Sep 5, 2023Updated 2 years ago
- Continuous relaxation of Random Regression Forests☆16Mar 25, 2018Updated 8 years ago
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆27Mar 31, 2026Updated last month
- Pytorch implementation for "Particle Flow Bayes' Rule"☆16Jun 22, 2019Updated 6 years ago
- RNNTool is a matlab toolbox for Recurrent Neural Network☆12Sep 27, 2013Updated 12 years ago
- DLBI: Deep learning guided Bayesian inference for structure reconstruction of super-resolution fluorescence microscopy☆14May 20, 2018Updated 7 years ago
- Multiple sequence aligner for protein and DNA/RNA.☆26Jan 3, 2018Updated 8 years ago
- Repo for the Deep Reinforcement Learning Nanodegree program☆12Jun 12, 2023Updated 2 years ago
- An RNA virus strain-level identification tool for short reads.☆23Apr 6, 2026Updated 3 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Model for taxonomy classification☆16May 28, 2021Updated 4 years ago
- UFCG: Universal Fungal Core Genes☆36Jul 29, 2025Updated 9 months ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- Genevieve client: using GenNotes, report ClinVar for individual genomes & add consensus notes☆10Aug 2, 2016Updated 9 years ago
- GO-terms Semantic Similarity Measures☆70Jan 20, 2026Updated 3 months ago
- NLR annotation tool☆36Mar 6, 2024Updated 2 years ago
- Graph convolutional neural network for host prediction☆18Jul 13, 2025Updated 9 months ago