yuanyc06 / deepgene
Source code of the paper "DeepGene: an advanced cancer type classifier based on deep learning and somatic point mutations"
☆13Updated 7 years ago
Alternatives and similar repositories for deepgene:
Users that are interested in deepgene are comparing it to the libraries listed below
- Understanding sequence conservation with deep learning☆20Updated 8 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 6 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆25Updated 7 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆14Updated 6 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆24Updated 6 years ago
- Tools for munging genomic data☆21Updated 5 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 7 years ago
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44Updated 6 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- ☆19Updated 4 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆63Updated 4 years ago
- ☆11Updated 6 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆23Updated 2 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆29Updated last year
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Updated 6 years ago
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Updated 5 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆33Updated 5 years ago
- inferring sequence-structure motifs using deep learning☆37Updated last year
- This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…☆50Updated 7 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago