Source code of the paper "DeepGene: an advanced cancer type classifier based on deep learning and somatic point mutations"
☆13Sep 7, 2017Updated 8 years ago
Alternatives and similar repositories for deepgene
Users that are interested in deepgene are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 9 years ago
- ☆36Sep 6, 2017Updated 8 years ago
- Code for KekuleScope☆11Nov 22, 2022Updated 3 years ago
- Public repository for building and analyzing protein complex maps☆12Dec 6, 2016Updated 9 years ago
- Somatic point mutation caller☆17Jul 8, 2016Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆11Aug 3, 2018Updated 7 years ago
- Using Machine Learning to Identify Glioblastoma patients with NF1 inactivation☆11Dec 19, 2016Updated 9 years ago
- Code Repo for Doctor2vec☆11Jan 23, 2020Updated 6 years ago
- A curated list of awesome deep learning applications in the field of computational biology☆11Aug 3, 2016Updated 9 years ago
- Source code and data for "Pan-cancer analysis of bi-allelic alterations in homologous recombination (HR) DNA repair genes" ; See manuscri…☆13May 26, 2017Updated 9 years ago
- A repository housing metadata and data files (or links to data files) that are being prepared as sample data bundles for various uses.☆13Feb 12, 2022Updated 4 years ago
- This is the repository for paper titled as "Convolutional neural network models for cancer type prediction based on gene expression".☆12Dec 9, 2020Updated 5 years ago
- Deep proteome inference from peptide profiles☆13Jul 16, 2020Updated 5 years ago
- Integration ribosome profiling - mass spectrometry☆15Nov 4, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Stack denoising autoencoder (SdA) code in "Deep learning based functional site-level and UTR-level human miRNA target prediction"☆11May 7, 2019Updated 7 years ago
- Official Pytorch implementation of Chromatic Graph Transformers☆10Jun 14, 2023Updated 2 years ago
- Towards Better Graph Representation Learning with Parameterized Decomposition & Filtering☆13Aug 22, 2023Updated 2 years ago
- TCGA Benchmark Tasks for Clinical Attribute Prediction based on Genome☆14Mar 16, 2021Updated 5 years ago
- Implementation of "Semi-supervised learning of hierarchical representations of molecules using neural message passing" (arXiv:1711.10168)☆14Jun 20, 2018Updated 7 years ago
- Frontend for CRM (MIT)☆14Jul 6, 2015Updated 10 years ago
- ☆12Sep 25, 2021Updated 4 years ago
- This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…☆50Apr 30, 2017Updated 9 years ago
- ☆22Jul 2, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Nov 2, 2020Updated 5 years ago
- g2-MLP: State-of-the-Art Model for Node Classification on Graphs (PPI Dataset)☆10Nov 12, 2022Updated 3 years ago
- A general forcefield for phonon properties of metal-organic frameworks☆13Sep 13, 2020Updated 5 years ago
- ☆18Sep 28, 2015Updated 10 years ago
- Improved Scaffold Hopping in Ligand-based Virtual Screening Using Neural Representation Learning☆21Mar 9, 2021Updated 5 years ago
- RefDNN: a reference drug based neural network for more accurate prediction of anticancer drug resistance (Scientific Reports)☆14Apr 21, 2022Updated 4 years ago
- Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models☆23Oct 22, 2018Updated 7 years ago
- ☆23May 1, 2026Updated 3 weeks ago
- A type-checker which can process recursive types and data☆12Jan 22, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways☆63Mar 18, 2024Updated 2 years ago
- Tutorial on the usage of Rdkit, Pandas, sklearn, machine learning, descriptor calculation, etc.. in the context of bioactivity predictive…☆14Sep 28, 2014Updated 11 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆19Jul 10, 2018Updated 7 years ago
- Boost lung Cancer Detection using Generative model and Semi-Supervised Learning☆10Jul 21, 2018Updated 7 years ago
- The AiGEM software suite of Team Heidelberg 2017☆15Apr 17, 2018Updated 8 years ago
- DeepGO with Fuzzy DL☆34Sep 19, 2022Updated 3 years ago