iomega / spec2vec_gnps_data_analysisLinks
Analysis and benchmarking of mass spectra similarity measures using gnps data set.
☆24Updated 4 years ago
Alternatives and similar repositories for spec2vec_gnps_data_analysis
Users that are interested in spec2vec_gnps_data_analysis are comparing it to the libraries listed below
Sorting:
- A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data☆26Updated last year
- Word2Vec based similarity measure of mass spectrometry data.☆77Updated 2 months ago
- ☆23Updated 9 months ago
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆24Updated last year
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆34Updated 2 years ago
- A small library to provide peak picking for software processing mass spectrometry data☆23Updated last year
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆59Updated last month
- a *biosynformatic* fingerprint to explore natural product distance and diversity☆20Updated 4 months ago
- BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)☆19Updated 2 years ago
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆19Updated last year
- Python pipeline for metabolomics data preprocessing, QC, standardization and annotation☆16Updated last month
- ☆11Updated last year
- a python package for molecular formula analysis in MS-based small molecule studies☆32Updated 6 months ago
- A Python wrapper for the Chemistry Development Kit (CDK)☆38Updated 4 months ago
- Peak detection for untargeted metabolomics using Neural Network. High-level API based on peakonly by @Arseha.☆17Updated last year
- Efficiently predicting high resolution mass spectra with graph neural networks☆32Updated 2 years ago
- ☆20Updated 2 years ago
- ☆22Updated 4 months ago
- ☆33Updated last year
- A database of In-Silico predicted MS/MS spectrum of Natural Products☆15Updated 3 years ago
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆33Updated last week
- A package to cluster and visualise MS/MS spectral data☆11Updated 4 years ago
- TidyMS: Tools for working with MS data in untargeted metabolomics☆59Updated last year
- Bottom-up MS/MS interrogation & Experiment-specific global annotation☆30Updated last year
- ☆18Updated 6 years ago
- ☆29Updated last year
- IsoCor: Isotope Correction for mass spectrometry labeling experiments☆25Updated 8 months ago
- Tools for analysis of Mass Spectrometry data using the Wasserstein metric☆18Updated last year
- Scalable and self-optimizing processing workflow for untargeted LC-MS☆30Updated last year
- ☆36Updated last month