Alternatives and similar repositories for cellprofiler-docker

Users that are interested in cellprofiler-docker are comparing it to the libraries listed below

• lewlin / a-large-image-tiler
  (Python3, PyQt5) GUI software to tile large images. Designed to image 96-well plates used in wet labs.
  ☆12Updated 7 years ago
• mobie / mobie-viewer-fiji
  ☆37Updated last month
• hinderling / napari_pixel_classifier
  An Ilastik-like interactive pixel classifier.
  ☆16Updated 10 months ago
• CellProfiler / notebooks
  Jupyter notebooks for CellProfiler and friends
  ☆13Updated 7 years ago
• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 3 years ago
• biovoxxel / bv3dbox
  The known BioVoxxel Toolbox functions now improved for 2D and 3D images
  ☆17Updated last week
• ilastik / ilastik-napari
  ilastik plugin for napari
  ☆14Updated last year
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆29Updated 3 months ago
• rosalindfranklininstitute / RedLionfish
  ☆30Updated last year
• chanzuckerberg / napari-hub
  Discover, install, and share napari plugins
  ☆52Updated last month
• haesleinhuepf / bia-bob
  BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
  ☆116Updated 2 weeks ago
• ScaDS / BIDS-lecture-2024
  Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…
  ☆38Updated last year
• spatial-image / spatial-image
  A multi-dimensional spatial image data structure for scientific Python.
  ☆40Updated 2 months ago
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated 11 months ago
• oanegros / Blender_for_Biologists_2023
  ☆39Updated 11 months ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆67Updated last week
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆37Updated last week
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• PolusAI / nyxus
  A fully scalable robust image feature extraction library.
  ☆24Updated 2 weeks ago
• multiview-stitcher / napari-stitcher
  A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher
  ☆16Updated last week
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆46Updated 4 months ago
• haesleinhuepf / awesome-napari-plugins-that-are-not-on-the-napari-hub-yet
  ☆24Updated 2 years ago
• kwolbachia / Visualization_toolset
  Imagej toolset to ease hyperstacks visualization and handling
  ☆22Updated 9 months ago
• imjoy-team / kaibu
  Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.
  ☆34Updated 3 months ago
• tlambert03 / imarispy
  Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer
  ☆12Updated 3 years ago
• cytomining / copairs
  Find profile pairs and compute metrics between them.
  ☆17Updated 2 weeks ago
• napari / cookiecutter-napari-plugin
  Cookiecutter for napari plugins
  ☆70Updated 8 months ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated this week
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated 3 months ago
• PRNicovich / 3D-Printed-Optics-Lab-Parts
  Various parts made for fluorescence microscopy + optics work
  ☆16Updated 5 years ago