Flexible HDF5 saving/loading library forked from deepdish (University of Chicago) and maintained by the Portugues lab
☆16Dec 6, 2024Updated last year
Alternatives and similar repositories for flammkuchen
Users that are interested in flammkuchen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Red-C data processing☆15Apr 18, 2023Updated 3 years ago
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 3 years ago
- Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and…☆15Jun 11, 2026Updated 3 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆10Aug 7, 2020Updated 5 years ago
- ☆14Feb 11, 2020Updated 6 years ago
- A small python library to adjust and annotate axis ticklabels in plots.☆53Aug 4, 2025Updated 11 months ago
- A minimal package for saving and reading large HDF5-based chunked arrays.☆15Apr 12, 2022Updated 4 years ago
- Basic notebook checks. Do they run? Do they contain lint?☆17Sep 26, 2025Updated 9 months ago
- Blazing fast toolkit to work with .hic and .cool files☆45Jun 29, 2026Updated last week
- Python bindings to UCSC BigWig and BigBed library☆36Jun 22, 2026Updated 2 weeks ago
- An algorithm for mapping cell state transitions.☆28Mar 3, 2023Updated 3 years ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fork of Gogs (https://github.com/gogs/gogs) "a painless self-hosted Git service" with added features for research data management☆16Feb 25, 2023Updated 3 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆12Dec 14, 2025Updated 6 months ago
- Python playground for cell-type-specific biology☆14Jul 2, 2026Updated last week
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 4 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆42Jan 31, 2024Updated 2 years ago
- PCaDB - a comprehensive and interactive database for transcriptomes from prostate cancer population cohorts☆10Dec 29, 2021Updated 4 years ago
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 11 months ago
- CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations f…☆14Jul 19, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 3 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- JavaScript matrix visualization and analysis☆71Aug 1, 2024Updated last year
- ☆18Feb 1, 2024Updated 2 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆19Dec 18, 2022Updated 3 years ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆16Dec 26, 2021Updated 4 years ago
- Library for KEGG pathway enrichment analysis☆19Jun 24, 2026Updated 2 weeks ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 5 years ago
- A tool for identifying Phenotype-Associated cell Subpopulations from single-cell sequencing data by integrating bulk data☆19Jan 16, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Python implementation for BH-FDR and HiCCUPS☆54Dec 29, 2025Updated 6 months ago
- OME-TIFF IO in python☆28Apr 10, 2025Updated last year
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Jun 4, 2023Updated 3 years ago
- ☆10Mar 5, 2019Updated 7 years ago
- GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted …☆10Nov 18, 2023Updated 2 years ago
- ☆16Oct 18, 2023Updated 2 years ago
- A nextflow pipeline for calling exome CNVs☆14Jun 22, 2026Updated 2 weeks ago