HallLab / pandas-genomicsLinks
Pandas ExtensionDtypes for dealing with genomics data
☆47Updated 4 months ago
Alternatives and similar repositories for pandas-genomics
Users that are interested in pandas-genomics are comparing it to the libraries listed below
Sorting:
- ☆55Updated last year
- interpret deep learning models in a framework-independent fashion☆41Updated last month
- Examples using Clustergrammer2 to explore high-dimensional datasets.☆40Updated 5 years ago
- jinja2-enabled jupyter notebooks☆37Updated 2 weeks ago
- Snakemake-like pipeline manager for reproducible Jupyter Notebooks☆17Updated 4 years ago
- TigerLily: Finding drug interactions in silico with the Graph.☆100Updated 2 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Updated 4 years ago
- Demo of Hydra☆18Updated 3 years ago
- Tutorials on data science/machine learning using Python with a life-science perspective. When I started learning programming and machine …☆13Updated 3 years ago
- Find bimodal, unimodal, and multimodal features in your data☆27Updated 7 years ago
- Explaining dimensionality results using SHAP values☆55Updated 9 months ago
- Proof of concept code from Gretel.ai and Illumina using generative neural networks to create synthetic versions of mouse genotype and phe…☆34Updated 3 years ago
- SDSU Data Science Symposium 2024 - Docker Workshop☆41Updated last year
- PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis☆35Updated 2 years ago
- Using PubMed to find out how a gene contributes to addiction.☆20Updated 2 years ago
- Here I show how to use Deep Learning for biological and biomedical Data Integration.☆11Updated 5 years ago
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆39Updated 4 months ago
- A spectral method for assessing and combining multiple data visualizations☆50Updated 2 years ago
- "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.☆118Updated 2 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆59Updated 4 years ago
- Literature mining for T cell relations☆23Updated 3 years ago
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆68Updated 2 years ago
- Small Dataset Benchmarks on the Dataset of Datasets UCI++☆87Updated 3 years ago
- Tools for building and manipulating graphs in Python☆43Updated this week
- A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions…☆48Updated 4 years ago
- Getting started guide to using GPUs for nCoV2019 research☆14Updated 5 years ago
- Sequence data label generation and ingestion into deep learning models☆12Updated 3 years ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Updated last year
- Tools for munging genomic data☆21Updated 6 years ago
- Visualization Tool for Mapping Out Researchers using Natural Language Processing☆57Updated last year