Pandas ExtensionDtypes for dealing with genomics data
☆48May 29, 2025Updated 9 months ago
Alternatives and similar repositories for pandas-genomics
Users that are interested in pandas-genomics are comparing it to the libraries listed below
Sorting:
- Minimal implementation of Denoised Smoothing (https://arxiv.org/abs/2003.01908) in TensorFlow.☆20Aug 4, 2021Updated 4 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Mar 10, 2026Updated last week
- Includes additional materials for the following keras.io blog post.☆12Jun 23, 2021Updated 4 years ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Jul 6, 2023Updated 2 years ago
- Refining the impact of genetic evidence on clinical success☆27Jul 14, 2024Updated last year
- ☆28Oct 4, 2022Updated 3 years ago
- This repository hosts the code to port NumPy model weights of BiT-ResNets to TensorFlow SavedModel format.☆14Dec 21, 2021Updated 4 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Protein design and variant prediction using autoregressive generative models☆24Feb 27, 2023Updated 3 years ago
- A collection of “cookbook-style” scripts for simplifying data engineering and machine learning in Apache Spark.☆13Oct 27, 2021Updated 4 years ago
- ☆14Jun 3, 2022Updated 3 years ago
- Code for experiments done for EMNLP2020.☆11Dec 8, 2022Updated 3 years ago
- Implementation of Vision Transformers in Flax☆18Oct 12, 2020Updated 5 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Nov 25, 2025Updated 3 months ago
- Confusion Matrix in Python: plot a pretty confusion matrix (like Matlab) in python using seaborn and matplotlib☆19Nov 19, 2021Updated 4 years ago
- Code for blog posts.☆20Oct 23, 2023Updated 2 years ago
- R Interface to the NCBI SRA metadata☆23Nov 19, 2018Updated 7 years ago
- Powerful rapid automatic EDA and feature engineering library with a very easy to use API 🌟☆53Jan 8, 2022Updated 4 years ago
- Cheminformatic analysis of small molecule type drugs in DrugBank for their ability to form nanoparticles with indocyanine dyes.☆11Apr 30, 2018Updated 7 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- ☆19Jun 14, 2024Updated last year
- PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees☆14Apr 15, 2024Updated last year
- Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a varie…☆40Jul 14, 2025Updated 8 months ago
- A visualization tool for Systems-Level Interactive Data Exploration☆12Jan 12, 2022Updated 4 years ago
- Deduplication based on custom inline DNA barcodes.☆21Aug 17, 2018Updated 7 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- ☆10Dec 29, 2021Updated 4 years ago
- Gene expression viewer template☆11Aug 30, 2017Updated 8 years ago
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo…☆39Jul 19, 2021Updated 4 years ago
- Implements MLP-Mixer (https://arxiv.org/abs/2105.01601) with the CIFAR-10 dataset.☆59Jun 26, 2022Updated 3 years ago
- Python CLI for alignment-free genomics.☆13Feb 11, 2026Updated last month
- Quality of life improvements for Bioinformatics in Python.☆31Feb 28, 2026Updated 3 weeks ago
- SpikeX - SpaCy Pipes for Knowledge Extraction☆403Jul 30, 2021Updated 4 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Oct 4, 2024Updated last year
- R package with Shiny application for DGE analysis☆12Jan 8, 2024Updated 2 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 9 months ago
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆58Sep 30, 2022Updated 3 years ago
- Fine-grained, dynamic control of neural network topology in JAX.☆22Jul 23, 2023Updated 2 years ago
- TIDDIT - structural variant calling☆78Dec 8, 2025Updated 3 months ago