HallLab / pandas-genomics
Pandas ExtensionDtypes for dealing with genomics data
☆47Updated 3 months ago
Alternatives and similar repositories for pandas-genomics:
Users that are interested in pandas-genomics are comparing it to the libraries listed below
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆39Updated 3 years ago
- CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.☆45Updated last year
- interpret deep learning models in a framework-independent fashion☆41Updated last year
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆40Updated 6 months ago
- PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis☆35Updated 2 years ago
- Examples using Clustergrammer2 to explore high-dimensional datasets.☆40Updated 4 years ago
- Find bimodal, unimodal, and multimodal features in your data☆27Updated 6 years ago
- ☆54Updated 5 months ago
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆68Updated 2 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Sequence data label generation and ingestion into deep learning models☆12Updated 3 years ago
- Universal RObust Peak Annotator☆15Updated last year
- jinja2-enabled jupyter notebooks☆36Updated 6 months ago
- Implementation of LSTM for detecting regions of Neanderthal introgression in modern human genomes☆9Updated 5 years ago
- HuBMAP Data Portal front end☆12Updated this week
- Applied Statistics for High-Throughput Biology☆16Updated 6 months ago
- Interactive multi-omics data explorer to integrate and interactively explore transcripts, proteins and metabolites data.☆12Updated 8 months ago
- Make machine learning simpler with Galaxy☆11Updated 7 months ago
- GECO (Gene Expression Clustering Optimization; theGECOapp.com) is a minimalistic GUI app that utilizes non-linear reduction techniques to…☆9Updated last year
- 📈 DNA Sequence Visualization for Humans☆40Updated 3 years ago
- Latent spaces for single cells☆21Updated last year
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Updated 7 months ago
- Fast and Versatile Alignments for Python☆48Updated last year
- Snakemake-like pipeline manager for reproducible Jupyter Notebooks☆17Updated 3 years ago
- Fit generalized linear models in python.☆27Updated last year
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆11Updated 4 years ago
- Deep learning-based prediction of regulatory genome sequences☆11Updated 4 years ago
- Easy genetic ancestry predictions in Python☆65Updated 2 months ago
- EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery☆21Updated 4 months ago
- Literature mining for T cell relations☆23Updated 2 years ago