Pandas ExtensionDtypes for dealing with genomics data
☆48May 29, 2025Updated last year
Alternatives and similar repositories for pandas-genomics
Users that are interested in pandas-genomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Minimal implementation of Denoised Smoothing (https://arxiv.org/abs/2003.01908) in TensorFlow.☆20Aug 4, 2021Updated 5 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated last month
- Includes additional materials for the following keras.io blog post.☆12Jun 23, 2021Updated 5 years ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Jul 6, 2023Updated 3 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Jan 23, 2020Updated 6 years ago
- Phinch is a data visualization framework aimed at promoting novel explorations of large biological datasets (microbiomes, metagenomes, et…☆43May 7, 2024Updated 2 years ago
- Unofficial PyTorch implementation of Neural Additive Models (NAM) by Agarwal, et al.☆14May 30, 2021Updated 5 years ago
- ☆20Oct 4, 2023Updated 3 years ago
- ☆15Jun 3, 2022Updated 4 years ago
- ☆16Aug 14, 2020Updated 6 years ago
- Code for experiments done for EMNLP2020.☆11Dec 8, 2022Updated 3 years ago
- Implementation of Vision Transformers in Flax☆18Oct 12, 2020Updated 6 years ago
- Multivariate Boosted TRee☆62Oct 3, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆15Sep 4, 2026Updated last month
- Confusion Matrix in Python: plot a pretty confusion matrix (like Matlab) in python using seaborn and matplotlib☆19Nov 19, 2021Updated 4 years ago
- evaluating vcf parsing libraries☆19Mar 1, 2022Updated 4 years ago
- R Interface to the NCBI SRA metadata☆23Nov 19, 2018Updated 7 years ago
- Cheminformatic analysis of small molecule type drugs in DrugBank for their ability to form nanoparticles with indocyanine dyes.☆11Apr 30, 2018Updated 8 years ago
- bedtools-like functionality for interval sets in rust☆56Aug 5, 2025Updated last year
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- ☆20Jun 14, 2024Updated 2 years ago
- A collection of molecular modelling tools for UCSF Chimera☆18Mar 26, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees☆14Apr 15, 2024Updated 2 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 6 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 3 years ago
- Deduplication based on custom inline DNA barcodes.☆20Aug 17, 2018Updated 8 years ago
- A visualization tool for Systems-Level Interactive Data Exploration☆13Jan 12, 2022Updated 4 years ago
- Application for mutagenic primer design. Facilitates development of biocatalysts (Green Chemistry) and new therapeutic proteins.☆19Feb 14, 2026Updated 7 months ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- Python framework for multi-parameter optimization and evaluation of protein folding models☆18Apr 12, 2021Updated 5 years ago
- vembrane filters, sorts, and transforms VCF records using python expressions☆70Oct 6, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆20Dec 8, 2020Updated 5 years ago
- Gene expression viewer template☆12Aug 30, 2017Updated 9 years ago
- Implements MLP-Mixer (https://arxiv.org/abs/2105.01601) with the CIFAR-10 dataset.☆58Jun 26, 2022Updated 4 years ago
- Filters for false-positive mutation calls in NGS☆34Apr 12, 2019Updated 7 years ago
- Quality of life improvements for Bioinformatics in Python.☆35Sep 15, 2026Updated 3 weeks ago
- SpikeX - SpaCy Pipes for Knowledge Extraction☆403Jul 30, 2021Updated 5 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆26Updated this week