HallLab / pandas-genomicsLinks
Pandas ExtensionDtypes for dealing with genomics data
☆47Updated 3 months ago
Alternatives and similar repositories for pandas-genomics
Users that are interested in pandas-genomics are comparing it to the libraries listed below
Sorting:
- ☆55Updated last year
- interpret deep learning models in a framework-independent fashion☆41Updated 4 months ago
- Snakemake-like pipeline manager for reproducible Jupyter Notebooks☆17Updated 3 years ago
- jinja2-enabled jupyter notebooks☆37Updated last week
- Using PubMed to find out how a gene contributes to addiction.☆20Updated 2 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Updated 3 years ago
- Examples using Clustergrammer2 to explore high-dimensional datasets.☆40Updated 5 years ago
- Demo of Hydra☆18Updated 3 years ago
- TigerLily: Finding drug interactions in silico with the Graph.☆99Updated 2 years ago
- CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.☆45Updated 2 years ago
- Tools for munging genomic data☆21Updated 6 years ago
- Proof of concept code from Gretel.ai and Illumina using generative neural networks to create synthetic versions of mouse genotype and phe…☆35Updated 3 years ago
- Tutorials on data science/machine learning using Python with a life-science perspective. When I started learning programming and machine …☆12Updated 3 years ago
- Genie: Fast and Robust Hierarchical Clustering with Noise Point Detection - in Python and R☆66Updated last month
- Find bimodal, unimodal, and multimodal features in your data☆27Updated 6 years ago
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆39Updated 3 months ago
- 📈 DNA Sequence Visualization for Humans☆41Updated 4 years ago
- Explaining dimensionality results using SHAP values☆54Updated 7 months ago
- Visualization Tool for Mapping Out Researchers using Natural Language Processing☆58Updated last year
- Workshop on Deep Learning for Health and Life Sciences☆15Updated 2 years ago
- Fast and Versatile Alignments for Python☆50Updated 2 years ago
- SDSU Data Science Symposium 2024 - Docker Workshop☆40Updated last year
- Easy genetic ancestry predictions in Python☆65Updated 2 months ago
- PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis☆35Updated 2 years ago
- EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery☆21Updated 11 months ago
- Make machine learning simpler with Galaxy☆11Updated last year
- Machine-curated database of genetic disease and genome-wide association studies☆57Updated 6 years ago
- Literature mining for T cell relations☆23Updated 3 years ago
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 5 years ago
- Deep learning-based prediction of regulatory genome sequences☆12Updated 5 years ago