Alternatives and similar repositories for pandas-genomics

Users that are interested in pandas-genomics are comparing it to the libraries listed below

• DasLab / KaggleOpenVaccine
  ☆55Updated last year
• IBM / depiction
  interpret deep learning models in a framework-independent fashion
  ☆41Updated 2 weeks ago
• chen42 / RatsPub
  Using PubMed to find out how a gene contributes to addiction.
  ☆20Updated 2 years ago
• MaayanLab / appyter
  jinja2-enabled jupyter notebooks
  ☆37Updated last week
• Pex2892 / PETAL
  PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis
  ☆35Updated 2 years ago
• krassowski / nbpipeline
  Snakemake-like pipeline manager for reproducible Jupyter Notebooks
  ☆17Updated 4 years ago
• ismms-himc / clustergrammer2-notebooks
  Examples using Clustergrammer2 to explore high-dimensional datasets.
  ☆40Updated 5 years ago
• khuyentran1401 / hydra_demo
  Demo of Hydra
  ☆18Updated 3 years ago
• benedekrozemberczki / tigerlily
  TigerLily: Finding drug interactions in silico with the Graph.
  ☆100Updated 2 years ago
• arvkevi / ezancestry
  Easy genetic ancestry predictions in Python
  ☆64Updated 3 months ago
• flo-compbio / monet
  Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces
  ☆40Updated 4 years ago
• rhondene / data_science_ML_lessons_biology
  Tutorials on data science/machine learning using Python with a life-science perspective. When I started learning programming and machine …
  ☆13Updated 3 years ago
• unlearnai / genemunge
  Tools for munging genomic data
  ☆21Updated 6 years ago
• leriomaggio / deep-learning-health-life-sciences
  Workshop on Deep Learning for Health and Life Sciences
  ☆15Updated 2 years ago
• YeoLab / anchor
  Find bimodal, unimodal, and multimodal features in your data
  ☆27Updated 6 years ago
• ahoarfrost / fastBio
  Deep learning library for biological sequences. Extension of Fastai and Pytorch.
  ☆39Updated 4 months ago
• NikolayOskolkov / HowUMAPWorks
  Here I explain the math behind UMAP and show how to program it from scratch in Python
  ☆38Updated 4 years ago
• AstraZeneca / awesome-drug-pair-scoring
  Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)
  ☆96Updated 3 years ago
• NikolayOskolkov / DeepLearningDataIntegration
  Here I show how to use Deep Learning for biological and biomedical Data Integration.
  ☆11Updated 5 years ago
• RamiKrispin / sdsu-docker-workshop
  SDSU Data Science Symposium 2024 - Docker Workshop
  ☆41Updated last year
• poke1024 / pyalign
  Fast and Versatile Alignments for Python
  ☆50Updated 2 years ago
• sergeyf / SmallDataBenchmarks
  Small Dataset Benchmarks on the Dataset of Datasets UCI++
  ☆87Updated 3 years ago
• kundajelab / seqdataloader
  Sequence data label generation and ingestion into deep learning models
  ☆12Updated 3 years ago
• KrishnaswamyLab / graphtools
  Tools for building and manipulating graphs in Python
  ☆42Updated last month
• davisidarta / dbMAP
  A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions…
  ☆48Updated 4 years ago
• hammerlab / t-cell-relation-extraction
  Literature mining for T cell relations
  ☆23Updated 3 years ago
• verilylifesciences / site-selection-tool
  The Baseline Site Selection Tool implements simulation tools for clinical trial enrollment.
  ☆18Updated 3 years ago
• lrgr / multifactorial-immune-response
  Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features
  ☆14Updated 7 years ago
• mlf-core / mlf-core
  CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.
  ☆45Updated 2 years ago
• gretelai / synthetic-data-genomics
  Proof of concept code from Gretel.ai and Illumina using generative neural networks to create synthetic versions of mouse genotype and phe…
  ☆34Updated 3 years ago