krassowski / nbpipeline
Snakemake-like pipeline manager for reproducible Jupyter Notebooks
☆17Updated 3 years ago
Alternatives and similar repositories for nbpipeline
Users that are interested in nbpipeline are comparing it to the libraries listed below
Sorting:
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Updated 4 years ago
- Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots☆31Updated 3 years ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Updated last year
- %conda magic for IPython☆28Updated 8 years ago
- jinja2-enabled jupyter notebooks☆37Updated 3 weeks ago
- Batch scripts curating BioRxiv and PubMed articles by using Altmetric score.☆11Updated 5 years ago
- Semantic Reader of the Scientific Literature☆12Updated last year
- A pedagogical implementation of panel apps served up on a remote machine.☆14Updated 3 years ago
- Proteins as words, genomes as documents.☆20Updated 4 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Updated 10 months ago
- International BioHackathon Directory of Events, Projects and Communities☆11Updated 3 months ago
- CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.☆46Updated 2 years ago
- The documentation for the Clustergrammer project☆10Updated 4 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 9 months ago
- 😠 Jupyter Widget bindings for UpSet.js for rendering UpSet plots, Euler, and Venn Diagrams☆14Updated 3 years ago
- IPython magic for simple, organized, compressed and encrypted: storage & transfer of files between notebooks.☆12Updated 2 years ago
- Tools for munging genomic data☆21Updated 5 years ago
- Literature mining for T cell relations☆23Updated 2 years ago
- ☆24Updated 10 months ago
- Utility to generate plots with categorical variables using Altair.☆25Updated 6 years ago
- Create minimal docker images from conda environments☆59Updated last year
- ☆27Updated 5 years ago
- bioinformatics visualization tools with pyviz/bokeh☆20Updated last year
- ☆21Updated 8 years ago
- Framework for running text mining tools on latest publications. Main page at:☆14Updated 2 years ago
- ☆13Updated 3 years ago
- Pandas ExtensionDtypes for dealing with genomics data☆47Updated 6 months ago
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆26Updated last year
- ☆10Updated 7 months ago