krassowski / nbpipelineLinks
Snakemake-like pipeline manager for reproducible Jupyter Notebooks
☆17Updated 4 years ago
Alternatives and similar repositories for nbpipeline
Users that are interested in nbpipeline are comparing it to the libraries listed below
Sorting:
- jinja2-enabled jupyter notebooks☆37Updated last week
- Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots☆32Updated 3 years ago
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Updated 4 years ago
- Venn diagrams with word clouds☆50Updated last year
- Utility to generate plots with categorical variables using Altair.☆25Updated 7 years ago
- The Clustergrammer interactive Jupyter notebook widget☆47Updated 2 years ago
- Pandas ExtensionDtypes for dealing with genomics data☆47Updated 6 months ago
- %conda magic for IPython☆28Updated 8 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 4 months ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Updated 2 years ago
- A pedagogical implementation of panel apps served up on a remote machine.☆14Updated 4 years ago
- 📊 A working, maintained copy of ggpy☆31Updated 6 years ago
- Bioinformatics in Python☆58Updated last year
- API providing access to papers and authors scraped from biorxiv.org☆56Updated 2 years ago
- Batch scripts curating BioRxiv and PubMed articles by using Altmetric score.☆11Updated 5 years ago
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆17Updated 2 years ago
- visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells☆78Updated 2 years ago
- Persist is a JupyterLab extension to enable persistent interactive visualizations in JupyterLab notebooks.☆46Updated 6 months ago
- Call Jupyter notebooks as Python functions☆56Updated 11 months ago
- UpSet - Visualizing Intersecting Sets☆71Updated 2 weeks ago
- International BioHackathon Directory of Events, Projects and Communities☆12Updated 4 months ago
- Tools for munging genomic data☆21Updated 6 years ago
- A python module for the clustergrammer matrix visualization project that creates the JSON object for the front-end JavaScript portion of …☆12Updated 4 years ago
- A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.☆47Updated last year
- Tips and tricks for plotting in python☆28Updated 7 years ago
- Examples using Clustergrammer2 to explore high-dimensional datasets.☆40Updated 5 years ago
- Python Wrapper for FIt-SNE☆45Updated 4 years ago
- "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.☆118Updated 2 years ago
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆69Updated 2 years ago
- Pandas DataFrames for phylogenetics☆74Updated 4 years ago