GenomicsStandardsConsortium / mixsLinks
Minimum Information about any (X) Sequence” (MIxS) specification
☆55Updated this week
Alternatives and similar repositories for mixs
Users that are interested in mixs are comparing it to the libraries listed below
Sorting:
- Sample search by metadata and features☆47Updated 2 years ago
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA☆14Updated 6 months ago
- SARS-CoV-2 workflow for nanopore sequence data☆42Updated 2 months ago
- Webin command line submission program.☆35Updated last month
- PaperBLAST: find papers about a protein or its homologs☆46Updated last month
- Protein Alignment and Detection Interface☆60Updated last year
- The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information req…☆23Updated 3 weeks ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- Bioinformatics Pipeline and Visualization resources☆58Updated last year
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆57Updated 2 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 8 months ago
- resources for bioinformatics education☆88Updated 5 months ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆32Updated 4 months ago
- Repository containing lists of all published ancient metagenomic (and related) samples and libraries☆77Updated last week
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆39Updated 2 weeks ago
- The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …☆20Updated 3 weeks ago
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆31Updated 2 months ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 3 years ago
- Testing building mulled containers for multi-requirement tools.☆80Updated last week
- (Meta-)genome screening for functional and natural product gene sequences☆92Updated last week
- Tutorial on using E-utilities☆23Updated 7 months ago
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.☆72Updated last week
- ☆79Updated last week
- The Biological Observation Matrix (BIOM) Format Project☆95Updated 2 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆61Updated 6 years ago
- This repository hosts a large collection of Nextflow snippets☆56Updated 9 months ago
- Scripts and libraries for Environmental Genomics☆38Updated 8 months ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆83Updated 10 months ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 4 months ago