Alternatives and similar repositories for mixs:

Users that are interested in mixs are comparing it to the libraries listed below

• microbialphenotypes / OMP-ontology
  This repository contains the editors's working copy of OMP and public release files.
  ☆8Updated 9 months ago
• microbiomedata / nmdc-metadata
  Managing metadata and policy around metadata in NMDC
  ☆2Updated 8 months ago
• GenEpiO / genepio
  The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information req…
  ☆19Updated 2 weeks ago
• OHMI-ontology / OHMI
  OHMI: The Ontology of Host-Microbiome Interactions
  ☆12Updated 2 years ago
• arpcard / aro
  The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …
  ☆17Updated last month
• biocore / redbiom
  Sample search by metadata and features
  ☆45Updated last year
• pha4ge / pipeline-resources
  Bioinformatics Pipeline and Visualization resources
  ☆55Updated 4 months ago
• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆37Updated 2 years ago
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆38Updated last month
• Planteome / plant-trait-ontology
  Explore the Plant Trait Ontology on the Planteome site.
  ☆40Updated 2 weeks ago
• monarch-initiative / pyphetools
  Python Phenopacket Tools
  ☆12Updated last week
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆27Updated 3 weeks ago
• usegalaxy-eu / ena-upload-cli
  ENA upload tool - script your Open Data upload to the European Nucleotide Archive
  ☆28Updated 2 weeks ago
• galaxyproject / iwc
  Galaxy Workflows maintained by the Intergalactic Workflow Commission
  ☆32Updated last week
• ukaraoz / microtrait
  ☆29Updated 10 months ago
• CDCgov / datasets-sars-cov-2
  Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)
  ☆54Updated last year
• ncbi / pipelines
  ☆13Updated 6 years ago
• GMOD / Chado
  the GMOD database schema
  ☆39Updated 6 months ago
• MicroB3-IS / osd-analysis
  Repository for all Ocean Sampling Day related source code with information on how-to acquire OSD data
  ☆13Updated 8 months ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated 9 months ago
• maximilianh / multiSub
  Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…
  ☆35Updated 2 years ago
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆42Updated 2 months ago
• cdanielmachado / smetana
  SMETANA: a tool to analyse interactions in microbial communities
  ☆57Updated 4 years ago
• biocore / biom-format
  The Biological Observation Matrix (BIOM) Format Project
  ☆92Updated last month
• shenwei356 / taxid-changelog
  NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.
  ☆30Updated last month
• ga4gh / va-spec
  An information model for representing variant annotations.
  ☆18Updated this week
• SPAAM-community / AncientMetagenomeDir
  Repository containing lists of all published ancient metagenomic (and related) samples and libraries
  ☆68Updated this week
• bpucker / FlavonoidFriday
  Flavonoids are specialized metabolites in plants that have numerous functions including protection against abiotic stresses, pigmentation…
  ☆15Updated 2 months ago
• phenopackets / phenopacket-format
  ☆26Updated 5 years ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆70Updated this week