Alternatives and similar repositories for mixs

Users that are interested in mixs are comparing it to the libraries listed below

• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆45Updated 3 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• biocore / redbiom
  Sample search by metadata and features
  ☆47Updated 2 years ago
• nf-core / multiplesequencealign
  A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
  ☆39Updated last month
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆47Updated 2 months ago
• CDCgov / datasets-sars-cov-2
  Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)
  ☆58Updated 2 years ago
• replikation / poreCov
  SARS-CoV-2 workflow for nanopore sequence data
  ☆42Updated 3 months ago
• GenEpiO / genepio
  The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information req…
  ☆23Updated last month
• arpcard / aro
  The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …
  ☆20Updated last month
• dalmolingroup / euryale
  A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA
  ☆14Updated 7 months ago
• pha4ge / pipeline-resources
  Bioinformatics Pipeline and Visualization resources
  ☆60Updated last year
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆51Updated this week
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆56Updated 9 months ago
• maximilianh / multiSub
  Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…
  ☆36Updated 3 years ago
• jwintersinger / kablammo
  Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.
  ☆67Updated 3 years ago
• schultzm / entrez_direct_tut
  Tutorial on using E-utilities
  ☆23Updated 8 months ago
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆54Updated 3 months ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆86Updated 3 years ago
• nf-core / funcscan
  (Meta-)genome screening for functional and natural product gene sequences
  ☆95Updated last week
• ncbi / pipelines
  ☆13Updated 6 years ago
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆52Updated 2 years ago
• groupschoof / AHRD
  High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
  ☆67Updated 2 years ago
• taxoniq / taxoniq
  Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data
  ☆60Updated last year
• lskatz / awesome-bioinformatics-education
  resources for bioinformatics education
  ☆94Updated 6 months ago
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆122Updated last month
• SPAAM-community / AncientMetagenomeDir
  Repository containing lists of all published ancient metagenomic (and related) samples and libraries
  ☆77Updated this week
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆44Updated 3 months ago
• chanzuckerberg / czid-workflows
  Portable WDL workflows for CZ ID production pipelines
  ☆48Updated 5 months ago
• neherlab / pan-genome-visualization
  Visualization of the pan-genome output by panX
  ☆65Updated 5 months ago
• EBI-Metagenomics / MGnifyR
  R package for searching, downloading and analysis of EBI MGnify metagenomics data
  ☆23Updated last month