Alternatives and similar repositories for mixs

Users that are interested in mixs are comparing it to the libraries listed below

• biocore / redbiom
  Sample search by metadata and features
  ☆47Updated 2 years ago
• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆44Updated 3 years ago
• schultzm / entrez_direct_tut
  Tutorial on using E-utilities
  ☆23Updated 6 months ago
• arpcard / aro
  The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …
  ☆20Updated last month
• GenEpiO / genepio
  The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information req…
  ☆21Updated last month
• dalmolingroup / euryale
  A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA
  ☆14Updated 5 months ago
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆50Updated 7 months ago
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆45Updated 3 weeks ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• pathoplexus / pathoplexus
  An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.
  ☆47Updated this week
• pha4ge / pipeline-resources
  Bioinformatics Pipeline and Visualization resources
  ☆57Updated last year
• ncbi / rapt
  This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.
  ☆59Updated 5 months ago
• arpcard / amr_curation
  A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curat…
  ☆61Updated 9 months ago
• nf-core / funcscan
  (Meta-)genome screening for functional and natural product gene sequences
  ☆91Updated 2 weeks ago
• replikation / poreCov
  SARS-CoV-2 workflow for nanopore sequence data
  ☆41Updated last month
• lmrodriguezr / enveomics
  Scripts and libraries for Environmental Genomics
  ☆38Updated 7 months ago
• hzi-bifo / traitar
  From genomes to phenotypes: Traitar, the microbial trait analyzer
  ☆60Updated 6 years ago
• chanzuckerberg / czid-workflows
  Portable WDL workflows for CZ ID production pipelines
  ☆47Updated 3 months ago
• bede / hostile
  Precise host read removal
  ☆103Updated 2 weeks ago
• evolbioinfo / goalign
  Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.
  ☆87Updated last month
• AllTheBacteria / AllTheBacteria
  Follow up to Grace Blackwell's 661k dataset, for 2023
  ☆122Updated 3 weeks ago
• OHMI-ontology / OHMI
  OHMI: The Ontology of Host-Microbiome Interactions
  ☆12Updated 3 years ago
• vibbits / phyd3
  Phylogenetic tree viewer based on D3.js
  ☆58Updated last year
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆85Updated 2 years ago
• pierrebarbera / epa-ng
  Massively parallel phylogenetic placement of genetic sequences
  ☆84Updated 3 years ago
• deprekate / PHANOTATE
  PHANOTATE: a gene caller for phages.
  ☆77Updated 9 months ago
• achtman-lab / GrapeTree
  GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…
  ☆83Updated 9 months ago
• oschwengers / referenceseeker
  Rapid determination of appropriate reference genomes.
  ☆97Updated 7 months ago
• jameshadfield / phandango
  an interactive viewer for populations of bacterial genomes linked by a phylogeny
  ☆128Updated last year
• maximilianh / multiSub
  Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…
  ☆36Updated 3 years ago