Alternatives and similar repositories for mixs

Users that are interested in mixs are comparing it to the libraries listed below

• GenEpiO / genepio
  The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information req…
  ☆23Updated 2 months ago
• arpcard / aro
  The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …
  ☆20Updated 2 months ago
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆48Updated last week
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆45Updated 3 years ago
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆52Updated 3 weeks ago
• biocore / redbiom
  Sample search by metadata and features
  ☆47Updated 2 years ago
• CDCgov / datasets-sars-cov-2
  Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)
  ☆58Updated 2 years ago
• dalmolingroup / euryale
  A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA
  ☆14Updated 7 months ago
• enasequence / webin-cli
  Webin command line submission program.
  ☆36Updated 2 months ago
• maximilianh / multiSub
  Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…
  ☆36Updated 3 years ago
• pha4ge / pipeline-resources
  Bioinformatics Pipeline and Visualization resources
  ☆60Updated last year
• nf-core / multiplesequencealign
  A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
  ☆39Updated 3 weeks ago
• replikation / poreCov
  SARS-CoV-2 workflow for nanopore sequence data
  ☆42Updated this week
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆32Updated 6 months ago
• The-Sequence-Ontology / SO-Ontologies
  Collect of SO Ontologies
  ☆102Updated 3 months ago
• JLSteenwyk / ClipKIT
  a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
  ☆81Updated last month
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆86Updated 3 years ago
• biocore / empress
  A fast and scalable phylogenetic tree viewer for microbiome data analysis
  ☆55Updated last year
• epruesse / SINA
  SINA - Reference based multiple sequence alignment
  ☆41Updated 5 years ago
• jwintersinger / kablammo
  Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.
  ☆65Updated 3 years ago
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆13Updated 3 years ago
• arpcard / amr_curation
  A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curat…
  ☆63Updated 2 months ago
• SPAAM-community / AncientMetagenomeDir
  Repository containing lists of all published ancient metagenomic (and related) samples and libraries
  ☆77Updated this week
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆52Updated 2 years ago
• jameshadfield / phandango
  an interactive viewer for populations of bacterial genomes linked by a phylogeny
  ☆129Updated last year
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆56Updated 10 months ago
• AllTheBacteria / AllTheBacteria
  Follow up to Grace Blackwell's 661k dataset, for 2023
  ☆127Updated 3 months ago
• ktmeaton / NCBImeta
  Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).
  ☆50Updated 3 years ago
• GMOD / Chado
  the GMOD database schema
  ☆44Updated last year