Minimum Information about any (X) Sequence” (MIxS) specification
☆63Aug 5, 2026Updated this week
Alternatives and similar repositories for mixs
Users that are interested in mixs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genomic Biodiversity Interest Group☆20Jun 7, 2025Updated last year
- A community-driven ontology for the representation of environments☆167Jun 29, 2026Updated last month
- RhyDB – High-performance analytical database for sequence alignment data☆19Updated this week
- US Health and Human Services scientific funding visualizations☆17Updated this week
- wrapper for multiple linkml storage engines☆26Apr 28, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- PanGenomePipeline☆16Apr 10, 2024Updated 2 years ago
- Humboldt Core Charter, a Task Group of the Observations & specimens Interest Group☆10Jun 8, 2026Updated 2 months ago
- Ontology Access Kit: A python library and command line application for working with ontologies☆192Updated this week
- A toolbox for comparative genomics.☆110May 26, 2021Updated 5 years ago
- A comprehensive prokaryotic genome annotation pipeline☆91Jul 30, 2026Updated last week
- Render viral capsids in the browser and export SVG.☆12Aug 2, 2026Updated last week
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads☆51Aug 3, 2026Updated last week
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Jul 21, 2026Updated 2 weeks ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆21Nov 24, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Wrapper for multiple AI coders (goose, claude code, codex)☆21Dec 15, 2025Updated 7 months ago
- ☆15Mar 13, 2026Updated 4 months ago
- ☆19May 19, 2022Updated 4 years ago
- akutils with massive updates over v1.1 to functionality and command line interface.☆15Jun 25, 2019Updated 7 years ago
- An ontology of core ecological entities☆17Updated this week
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆19Aug 16, 2021Updated 4 years ago
- Tools for evolutionary forecasting☆14Jun 19, 2026Updated last month
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆26Jul 10, 2026Updated 3 weeks ago
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆11Feb 6, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa☆41Jul 17, 2026Updated 3 weeks ago
- National Microbiome Data Collaborative (NMDC) unified data model☆49Updated this week
- GenBank taxonomy processing tools☆15Jun 30, 2018Updated 8 years ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆54Jul 10, 2026Updated last month
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- sunburst plots for taxonomy - working to update Krona☆46Sep 22, 2025Updated 10 months ago
- Ontobee is a linked data server for ontologies. See: http://www.ontobee.org.☆28Mar 5, 2024Updated 2 years ago
- Workflow for processing OBIS tagged datasets in GBIF☆14May 18, 2026Updated 2 months ago
- ALignment Transformation EnviRonment☆12May 8, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆19Nov 7, 2025Updated 9 months ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆21Oct 17, 2023Updated 2 years ago
- Interactive phylogenetic tree based on D3.js☆16Mar 25, 2018Updated 8 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 11 months ago
- The sars R package☆10Jan 6, 2026Updated 7 months ago
- swirl the web in your cup☆12Oct 22, 2021Updated 4 years ago
- A system for managing OBO PURLs☆93Updated this week