GPU-accelerated Dynamic Time Warp (DTW) Barycenter Averaging
☆69Jul 24, 2025Updated 8 months ago
Alternatives and similar repositories for OpenDBA
Users that are interested in OpenDBA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cuDTW++: Ultra-Fast Dynamic Time Warping on CUDA-enabled GPUs☆33May 11, 2020Updated 5 years ago
- fork of dorado that supports S/BLOW5☆12Jan 8, 2026Updated 3 months ago
- DBA: Averaging for Dynamic Time Warping☆198Nov 23, 2020Updated 5 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆47Feb 3, 2026Updated 2 months ago
- Predictive kmer models for development use☆63Jun 6, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- a tool for simulating nanopore raw signal data☆76Mar 4, 2026Updated last month
- VBZ compression plugin for nanopore signal data☆43Apr 7, 2025Updated last year
- Linear memory CUDA Time Warp Edit Distance☆30Sep 8, 2022Updated 3 years ago
- fast time series visualization☆17Jun 28, 2019Updated 6 years ago
- A simple toolkit for manipulating nanopore signal data☆20Mar 14, 2026Updated 3 weeks ago
- ☆17Jul 28, 2025Updated 8 months ago
- Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warping for nanopore raw signal search (DSDTWnano) and the con…☆10Jul 13, 2020Updated 5 years ago
- direct RNA nanopore sequencing barcode design and demultiplexing☆20Mar 3, 2026Updated last month
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆18Oct 13, 2025Updated 5 months ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Oxford Nanopore Technologies fast5 API software☆154Feb 27, 2024Updated 2 years ago
- Super-fast and accurate demultiplexing of direct RNA-seq runs.☆20Updated this week
- Python3 Read Until API implementation☆11Mar 11, 2020Updated 6 years ago
- 🤓 Python Scripts for WBFM and AM demodulation. Accelerated with #cuSignal and Numba.☆42Feb 21, 2022Updated 4 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆163Mar 19, 2026Updated 3 weeks ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- ☆10Apr 8, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A simplified version of Dorado built on top of S/BLOW5 format.☆35Updated this week
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- python package for Japanese NLP and many other utils☆13Oct 19, 2019Updated 6 years ago
- Scripts for implementing read until and other examples.☆31Feb 25, 2020Updated 6 years ago
- A segmentation toolkit for segment the Nanopore RNA signal.☆20Feb 18, 2025Updated last year
- Tools used to analyze data from nanopore-based experiments.☆31Feb 1, 2015Updated 11 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- Nanopore basecalling and consensus decoding☆46Jul 22, 2022Updated 3 years ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆53Mar 30, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆23Feb 23, 2026Updated last month
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆94Jan 13, 2022Updated 4 years ago
- Extension of dtw-python package implementing Shape DTW algorithm in two multidimensional variants☆25Jun 19, 2023Updated 2 years ago
- Xron - an omni basecaller for ONT reads.☆24Nov 27, 2024Updated last year
- Catalogue of pairwise alignment algorithms and benchmarks