GPU-accelerated Dynamic Time Warp (DTW) Barycenter Averaging
☆70Jul 24, 2025Updated 10 months ago
Alternatives and similar repositories for OpenDBA
Users that are interested in OpenDBA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cuDTW++: Ultra-Fast Dynamic Time Warping on CUDA-enabled GPUs☆34May 11, 2020Updated 6 years ago
- DBA: Averaging for Dynamic Time Warping☆199Apr 22, 2026Updated last month
- lossless nanopore pod5 <=> s/blow5 file conversion☆48Apr 30, 2026Updated last month
- Predictive kmer models for development use☆64Jun 6, 2023Updated 3 years ago
- a tool for simulating nanopore raw signal data☆78Mar 4, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- GPU CRF-CTC decoding for nanopore basecalling☆15Jun 1, 2026Updated last week
- VBZ compression plugin for nanopore signal data☆43Apr 7, 2025Updated last year
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- A simple toolkit for manipulating nanopore signal data☆20Mar 14, 2026Updated 3 months ago
- ☆17Jul 28, 2025Updated 10 months ago
- Read Until client library for Nanopore Sequencing☆108Sep 25, 2024Updated last year
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- DTWNet: a Dynamic Time Warping Network☆67Nov 24, 2019Updated 6 years ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆18Oct 13, 2025Updated 8 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- A GP-GPU/CPU Dynamic Time Warping (DTW) implementation for the analysis of Multivariate Time Series (MTS).☆46Jan 17, 2020Updated 6 years ago
- Oxford Nanopore Technologies fast5 API software☆155Feb 27, 2024Updated 2 years ago
- Super-fast and accurate demultiplexing of direct RNA-seq runs.☆20Apr 7, 2026Updated 2 months ago
- Python3 Read Until API implementation☆11Mar 11, 2020Updated 6 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆164Mar 19, 2026Updated 2 months ago
- A simplified version of Dorado built on top of S/BLOW5 format.☆39Jun 4, 2026Updated last week
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- Scripts for implementing read until and other examples.☆31Feb 25, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A linear memory, parallelizable algorithm for Dynamic Time Warping (DTW). Also contains cython implementations of FastDTW, and Memory-Re…☆62Jul 3, 2024Updated last year
- A segmentation toolkit for segment the Nanopore RNA signal.☆20Feb 18, 2025Updated last year
- Tools used to analyze data from nanopore-based experiments.☆31Feb 1, 2015Updated 11 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- Codes and results from ONT dRNA benchmarking☆11Nov 28, 2023Updated 2 years ago
- Nanopore basecalling and consensus decoding☆46Jul 22, 2022Updated 3 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆24Feb 23, 2026Updated 3 months ago
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆94Jan 13, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Extension of dtw-python package implementing Shape DTW algorithm in two multidimensional variants☆26Jun 19, 2023Updated 2 years ago
- Xron - an omni basecaller for ONT reads.☆24Nov 27, 2024Updated last year
- Custom TensorFlow2 implementations of forward and backward computation of soft-DTW algorithm in batch mode.☆21Jun 7, 2021Updated 5 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 5 months ago
- Pod5: a high performance file format for nanopore reads.☆175Mar 31, 2026Updated 2 months ago
- Pipeline for Recombinant Yeast genoMEs That Identifies Markers of Engineering☆12May 13, 2024Updated 2 years ago
- Confidence Estimates with KalmanNet☆12Oct 6, 2021Updated 4 years ago