nodrogluap / OpenDBALinks
GPU-accelerated Dynamic Time Warp (DTW) Barycenter Averaging
☆68Updated last month
Alternatives and similar repositories for OpenDBA
Users that are interested in OpenDBA are comparing it to the libraries listed below
Sorting:
- fast, pure-python interval overlap testing☆52Updated 4 years ago
- Fast Bayesian Hidden Markov Model with Wavelet Compression☆17Updated 5 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 5 months ago
- A probabilistic framework in PyTorch for phylogenetic models☆17Updated 9 months ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 3 years ago
- Fast hierarchical clustering routines for R and Python.☆153Updated this week
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆17Updated 4 years ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆39Updated last year
- Here we address the global structure preservation by tSNE and UMAP☆48Updated 5 years ago
- genotype dimensionality reduction with a VAE☆46Updated 5 months ago
- ☆23Updated last year
- Python library to simulate evolutionary sequence data☆80Updated 3 years ago
- ☆21Updated 10 years ago
- gmtk - the graphical models toolkit☆24Updated 5 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 2 years ago
- Augmented Interval Tree implemented in Cython/C☆20Updated 7 months ago
- Learn interpretable computational phenotyping models from k-merized genomic data☆52Updated 3 years ago
- Efficient handling of FASTQ files from Python☆51Updated last month
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆220Updated 2 months ago
- Python Wrapper for FIt-SNE☆45Updated 4 years ago
- Monitor computational workflows in real time☆74Updated last year
- Here I explain the math behind UMAP and show how to program it from scratch in Python☆39Updated 4 years ago
- A minimal Python re-implementation of the A* with seed heuristic for exact global alignment (edit distance) in near-linear time☆22Updated 9 months ago
- Python implementation of Bayesian hierarchical clustering and Bayesian rose trees algorithms.☆17Updated 4 years ago
- Yet Another Motif Discovery Algorithm☆53Updated 6 years ago
- A versatile sequenced read processor for nanopore direct RNA sequencing☆81Updated 5 years ago
- TreeSwift: Fast tree module for Python 3☆81Updated 9 months ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆85Updated 11 months ago
- DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG☆69Updated 7 years ago
- Performs memory-efficient reservoir sampling on very large input files delimited by newlines☆69Updated 5 years ago