Alternatives and similar repositories for OpenDBA:

Users that are interested in OpenDBA are comparing it to the libraries listed below

• gravitino / cudadtw
  GPU-Suite
  ☆83Updated 8 years ago
• wiedenhoeft / HaMMLET
  Fast Bayesian Hidden Markov Model with Wavelet Compression
  ☆17Updated 5 years ago
• kr-colab / popvae
  genotype dimensionality reduction with a VAE
  ☆43Updated last month
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 3 years ago
• NikolayOskolkov / tSNE_vs_UMAP_GlobalStructure
  Here we address the global structure preservation by tSNE and UMAP
  ☆48Updated 5 years ago
• kylessmith / ailist
  Augmented Interval Tree implemented in Cython/C
  ☆20Updated 3 months ago
• jmschrei / PyPore
  Tools used to analyze data from nanopore-based experiments.
  ☆30Updated 10 years ago
• kundajelab / seqdataloader
  Sequence data label generation and ingestion into deep learning models
  ☆12Updated 3 years ago
• KlugerLab / pyFIt-SNE
  Python Wrapper for FIt-SNE
  ☆45Updated 3 years ago
• NVIDIA-Genomics-Research / racon-gpu
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
  ☆17Updated 4 years ago
• gagolews / genieclust
  Genie: Fast and Robust Hierarchical Clustering with Noise Point Detection - in Python and R
  ☆62Updated this week
• arahuja / pytcga
  DEPRECATED: Store and query public TCGA data
  ☆11Updated 8 years ago
• 4ment / torchtree
  A probabilistic framework in PyTorch for phylogenetic models
  ☆16Updated 5 months ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 8 months ago
• pinellolab / GRAFIMO
  GRAph-based Finding of Individual Motif Occurrences
  ☆31Updated 8 months ago
• dkoslicki / CMash
  Fast and accurate set similarity estimation via containment min hash
  ☆42Updated 9 months ago
• ratschlab / graph_annotation
  Code accompanying the publication for compressed graph annotation
  ☆13Updated 6 years ago
• millanp95 / DeLUCS
  This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.
  ☆25Updated 2 years ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated 11 months ago
• asbschmidt / cuDTW
  cuDTW++: Ultra-Fast Dynamic Time Warping on CUDA-enabled GPUs
  ☆27Updated 4 years ago
• firebb / parahmm
  Parallel Implementation of HMM on Multicore Platform
  ☆25Updated 2 years ago
• nanoporetech / ont_h5_validator
  ☆12Updated 6 years ago
• Zilong-Li / PCAone
  Fast, Accurate and Memory-Efficient Principal Component Analysis For Tera-scale Dataset
  ☆45Updated this week
• jordisr / poreover
  Nanopore basecalling and consensus decoding
  ☆46Updated 2 years ago
• hyeshik / poreplex
  A versatile sequenced read processor for nanopore direct RNA sequencing
  ☆79Updated 4 years ago
• Kingsford-Group / omhismb2019
  ☆23Updated last year
• alimanfoo / vcfnp
  Load numpy arrays and HDF5 files from VCF (variant call format)
  ☆31Updated 7 years ago
• brentp / align
  sequence alignment. global, local, glocal.
  ☆41Updated 8 years ago
• kylessmith / dynamicTreeCut
  Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
  ☆40Updated 3 years ago
• harrispopgen / mushi
  [mu]tation [s]pectrum [h]istory [i]nference
  ☆25Updated 4 months ago