nodrogluap / OpenDBA
GPU-accelerated Dynamic Time Warp (DTW) Barycenter Averaging
☆64Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for OpenDBA
- GPU-Suite☆82Updated 8 years ago
- genotype dimensionality reduction with a VAE☆41Updated 6 months ago
- Fast Bayesian Hidden Markov Model with Wavelet Compression☆17Updated 4 years ago
- Categorical Variational Autoencoders☆23Updated 2 years ago
- Lightweight python library for predicting the difficulty of alignments in phylogenetics☆16Updated last month
- The Microbiome Interpretable Temporal Rule Engine☆45Updated 3 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆43Updated last year
- This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.☆24Updated 2 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated last year
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 3 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆57Updated 3 years ago
- GRAph-based Finding of Individual Motif Occurrences☆28Updated 2 months ago
- This Repository Contains the Source Code for the Python Implementation of Self Organizing Nebulous Growths☆23Updated last year
- Python-interface C++ library for Bayesian phylogenetics via optimization☆38Updated 7 months ago
- ☆10Updated 4 months ago
- Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling☆25Updated 2 years ago
- Python library to simulate evolutionary sequence data☆78Updated 2 years ago
- Phylogenetic inference using Stan☆23Updated last year
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆38Updated 3 years ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆76Updated last month
- Sequence data label generation and ingestion into deep learning models☆12Updated 3 years ago
- A probabilistic framework in PyTorch for phylogenetic models☆14Updated last week
- ☆13Updated last year
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 4 years ago
- ☆23Updated 11 months ago
- Nanopore basecalling and consensus decoding☆46Updated 2 years ago
- Fishers Exact Test for Python (Cython)☆64Updated 2 months ago
- Examples using Clustergrammer2 to explore high-dimensional datasets.☆40Updated 4 years ago
- Python version of Factored Spectrally Transformed Linear Mixed Models☆47Updated 2 weeks ago