davidcpage / seqdist

Related projects ⓘ

Alternatives and complementary repositories for seqdist

• jordisr / poreover
  Nanopore basecalling and consensus decoding
  ☆46Updated 2 years ago
• nanoporetech / currennt
  Modified fork of CURRENNT https://sourceforge.net/projects/currennt/
  ☆11Updated 8 years ago
• nanoporetech / taiyaki
  Training models for basecalling Oxford Nanopore reads
  ☆115Updated 2 years ago
• scastlara / minineedle
  Needleman-Wunsch and Smith-Waterman algorithms in python
  ☆46Updated 4 months ago
• QData / FastSK
  Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…
  ☆21Updated last year
• cschin / DCNet
  DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG
  ☆69Updated 6 years ago
• pinellolab / GRAFIMO
  GRAph-based Finding of Individual Motif Occurrences
  ☆27Updated 2 months ago
• kishwarshafin / pepper
  PEPPER-Margin-DeepVariant
  ☆245Updated 10 months ago
• al-mcintyre / mCaller
  A python program to call methylation (m6A in DNA) from nanopore signal data
  ☆45Updated 3 years ago
• ljdursi / poapy
  A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes
  ☆71Updated 4 months ago
• hendrixlab / mRNN
  mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.
  ☆19Updated 5 years ago
• nanoporetech / sloika
  Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling
  ☆25Updated 2 years ago
• lbcb-sci / GNNome
  A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.
  ☆30Updated 2 months ago
• fmfi-compbio / deepnano-blitz
  Very fast ONT basecaller
  ☆52Updated 2 years ago
• skovaka / uncalled4
  ☆43Updated last month
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆116Updated last week
• AnyDSL / anyseq
  genome sequence alignment
  ☆14Updated 5 years ago
• timkahlke / BASTA
  Basic Sequence Taxonomy Annotator
  ☆38Updated 6 months ago
• dnbaker / bioseq
  Tokenizers and Machine Learning Models for biological sequence data
  ☆24Updated last month
• giesselmann / STRique
  Nanopore raw signal repeat detection pipeline
  ☆45Updated last year
• pepebonet / DeepMP
  DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data
  ☆26Updated 2 years ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆115Updated 7 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆103Updated 4 months ago
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 3 years ago
• BioinformaticsToolsmith / MeShClust
  MeShClust: an intelligent tool for clustering DNA sequences
  ☆37Updated 2 years ago
• NeuroCSUT / ViraMiner
  CNN based classifier for detecting viral sequences among metagenomic contigs
  ☆32Updated 4 years ago
• debbiemarkslab / BEAR
  This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"
  ☆12Updated last year
• kundajelab / seqdataloader
  Sequence data label generation and ingestion into deep learning models
  ☆12Updated 2 years ago
• biodlab / RODAN
  A fully convolutional architecture for basecalling nanopore RNA sequencing data
  ☆11Updated last month
• haotianteng / Chiron
  A basecaller for Oxford Nanopore Technologies' sequencers
  ☆122Updated last year