davidcpage / seqdist
☆14Updated last year
Alternatives and similar repositories for seqdist:
Users that are interested in seqdist are comparing it to the libraries listed below
- Nanopore basecalling and consensus decoding☆46Updated 2 years ago
- Blitzing Fast CTC Beam Search Decoder☆182Updated 10 months ago
- Modified fork of CURRENNT https://sourceforge.net/projects/currennt/☆11Updated 8 years ago
- A curated list of papers dedicated to edit-distance as objective function☆54Updated 4 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Updated 7 months ago
- Intro how to install and use SGE(Sun Grid Engine) on ConteOS 7☆19Updated 6 years ago
- Training models for basecalling Oxford Nanopore reads☆115Updated 3 years ago
- DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG☆69Updated 6 years ago
- Very fast ONT basecaller☆53Updated 2 years ago
- Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"☆64Updated 4 years ago
- PEPPER-Margin-DeepVariant☆247Updated last year
- A python program to call methylation (m6A in DNA) from nanopore signal data☆46Updated 3 years ago
- ☆14Updated 4 years ago
- A versatile sequenced read processor for nanopore direct RNA sequencing☆79Updated 4 years ago
- Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…☆21Updated 2 years ago
- A segmentation toolkit for segment the Nanopore RNA signal.☆19Updated last month
- SquiggleKit: A toolkit for manipulating nanopore signal data☆124Updated last year
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆90Updated last month
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆101Updated 3 years ago
- Nanopore raw signal repeat detection pipeline☆45Updated 2 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆123Updated last week
- Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling☆25Updated 2 years ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆84Updated 2 years ago
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆102Updated 2 years ago
- A basecaller for Oxford Nanopore Technologies' sequencers☆122Updated last year
- Levenshtein edit-distance on PyTorch and CUDA☆94Updated 2 years ago
- Research release basecalling models and configurations☆108Updated 9 months ago
- Methylation/modified base calling separated from basecalling.☆168Updated 6 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆59Updated last week
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated 10 months ago