☆14Apr 12, 2023Updated 3 years ago
Alternatives and similar repositories for seqdist
Users that are interested in seqdist are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Unofficial implementation of "Non-Autoregressive Machine Translation with Latent Alignments" https://arxiv.org/abs/2004.07437☆23Jun 14, 2020Updated 5 years ago
- Nanopore basecalling and consensus decoding☆46Jul 22, 2022Updated 3 years ago
- lanmt ebm☆12Jun 19, 2020Updated 5 years ago
- Training models for basecalling Oxford Nanopore reads☆116Jan 13, 2022Updated 4 years ago
- Use Thor's Axe to cut exons into their evolutionary building blocks☆12Feb 3, 2026Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Benchmarking pairwise aligners☆37Feb 8, 2025Updated last year
- modlm: A toolkit for mixture of distributions language models☆27Feb 20, 2018Updated 8 years ago
- ☆15Dec 5, 2019Updated 6 years ago
- Rust spy functions for testing purposes☆11Aug 24, 2019Updated 6 years ago
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 11 years ago
- Python language bindings for bwa☆12Mar 27, 2026Updated 2 months ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 4 years ago
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 3 years ago
- ☆17Jul 28, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing☆173Dec 26, 2023Updated 2 years ago
- Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.☆11Apr 21, 2022Updated 4 years ago
- Very fast ONT basecaller☆52Jun 17, 2022Updated 3 years ago
- ENGINE: Energy-Based Inference Networks for Non-Autoregressive Machine Translation☆25Oct 2, 2020Updated 5 years ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- A tool for sniffing out the differences in vari-Ants☆41Apr 7, 2026Updated 2 months ago
- GenDP: A Dynamic Programming Framework for Genome Sequencing Analysis☆17Jan 12, 2024Updated 2 years ago
- ☆14Jul 4, 2022Updated 3 years ago
- ☆18Apr 18, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A PyTorch Basecaller for Oxford Nanopore Reads☆432Feb 20, 2026Updated 3 months ago
- An extension of thu-spmi/CAT which contains a full-fledged implementation of CTC-CRF for Tensorflow.☆12Jul 5, 2021Updated 4 years ago
- Flip-flop basecaller for Oxford Nanopore reads☆99Jan 13, 2022Updated 4 years ago
- HyperTwoBits implementation☆17Aug 29, 2025Updated 9 months ago
- Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.☆13Oct 15, 2021Updated 4 years ago
- Recombination maps from Bhérer, C. et al. Nature Communications☆13Apr 25, 2017Updated 9 years ago
- Pytorch version of Continuous Language Generative Flow (ACL 2021)☆11Sep 14, 2021Updated 4 years ago
- TVsub: DCU-Tencent Chinese-English Dialogue Corpus☆46Feb 14, 2018Updated 8 years ago
- Invertible Generative Flows☆85Apr 1, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Jul 11, 2022Updated 3 years ago
- ☆27Nov 14, 2025Updated 6 months ago
- Implementation of Residual LSTM: Design of a Deep Recurrent Architecture for Distant Speech Recognition☆10Feb 22, 2020Updated 6 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Feb 19, 2021Updated 5 years ago
- ☆32Sep 27, 2021Updated 4 years ago
- Implementation of the pseudo-reference generation algorithm proposed in EMNLP 2018 paper: Multi-Reference Training with Pseudo-References…☆11Oct 15, 2018Updated 7 years ago
- Semi supervised learning framework of Python.☆21Apr 5, 2024Updated 2 years ago