Alternatives and similar repositories for seqdist

Users that are interested in seqdist are comparing it to the libraries listed below

• nanoporetech / fast-ctc-decode
  Blitzing Fast CTC Beam Search Decoder
  ☆183Updated last year
• jordisr / poreover
  Nanopore basecalling and consensus decoding
  ☆46Updated 3 years ago
• 1ytic / pytorch-edit-distance
  Levenshtein edit-distance on PyTorch and CUDA
  ☆95Updated 2 years ago
• cschin / DCNet
  DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG
  ☆69Updated 7 years ago
• 1ytic / edit-distance-papers
  A curated list of papers dedicated to edit-distance as objective function
  ☆53Updated 4 years ago
• jakob-he / string-kernel
  A python package that includes a variety of string kernel methods.
  ☆17Updated 5 years ago
• nanoporetech / taiyaki
  Training models for basecalling Oxford Nanopore reads
  ☆115Updated 3 years ago
• wangkaisine / SGE-On-CentOS
  Intro how to install and use SGE(Sun Grid Engine) on ConteOS 7
  ☆19Updated 6 years ago
• nodrogluap / OpenDBA
  GPU-accelerated Dynamic Time Warp (DTW) Barycenter Averaging
  ☆67Updated 10 months ago
• nanoporetech / currennt
  Modified fork of CURRENNT https://sourceforge.net/projects/currennt/
  ☆11Updated 8 years ago
• scastlara / minineedle
  Needleman-Wunsch and Smith-Waterman algorithms in python
  ☆47Updated last year
• ljdursi / poapy
  A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes
  ☆74Updated last year
• haotianteng / Chiron
  A basecaller for Oxford Nanopore Technologies' sequencers
  ☆122Updated 2 years ago
• nanoporetech / bonito
  A PyTorch Basecaller for Oxford Nanopore Reads
  ☆421Updated last month
• kishwarshafin / pepper
  PEPPER-Margin-DeepVariant
  ☆250Updated last year
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 3 years ago
• huangnengCSU / SACall-basecaller
  ☆15Updated 5 years ago
• aquaskyline / Clairvoyante
  Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
  ☆171Updated last year
• alevchuk / pairwise-alignment-in-python
  Pairwise string alignment in Python (Needleman-Wunsch and Smith-Waterman algorithms)
  ☆97Updated 7 years ago
• rajanil / riboHMM
  A mixture of hidden Markov models to infer translated sequences using ribosome footprint profiling
  ☆8Updated 6 years ago
• NVIDIA-Genomics-Research / racon-gpu
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
  ☆17Updated 4 years ago
• jeffdaily / parasail-python
  Python bindings for the parasail C library.
  ☆103Updated 10 months ago
• liyu95 / DeepSimulator
  The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
  ☆121Updated 4 years ago
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆140Updated 3 weeks ago
• hyeshik / poreplex
  A versatile sequenced read processor for nanopore direct RNA sequencing
  ☆80Updated 5 years ago
• nanoporetech / ont_fast5_api
  Oxford Nanopore Technologies fast5 API software
  ☆154Updated last year
• poke1024 / pyalign
  Fast and Versatile Alignments for Python
  ☆50Updated 2 years ago
• schatzlab / appliedgenomics2022
  Materials for EN.601.449/EN.601.649 Computational Genomics: Applied Comparative Genomics
  ☆22Updated 2 years ago
• HingeAssembler / HINGE
  Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
  ☆64Updated 4 years ago
• HKU-BAL / Clair
  Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
  ☆104Updated 2 years ago