Alternatives and similar repositories for seqdist

Users that are interested in seqdist are comparing it to the libraries listed below

• nanoporetech / fast-ctc-decode
  Blitzing Fast CTC Beam Search Decoder
  ☆185Updated 3 months ago
• scastlara / minineedle
  Needleman-Wunsch and Smith-Waterman algorithms in python
  ☆48Updated last year
• jordisr / poreover
  Nanopore basecalling and consensus decoding
  ☆46Updated 3 years ago
• 1ytic / pytorch-edit-distance
  Levenshtein edit-distance on PyTorch and CUDA
  ☆93Updated 3 years ago
• 1ytic / edit-distance-papers
  A curated list of papers dedicated to edit-distance as objective function
  ☆53Updated 5 years ago
• cschin / DCNet
  DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG
  ☆69Updated 7 years ago
• wangkaisine / SGE-On-CentOS
  Intro how to install and use SGE(Sun Grid Engine) on ConteOS 7
  ☆19Updated 7 years ago
• lucidrains / tf-bind-transformer
  A repository with exploration into using transformers to predict DNA ↔ transcription factor binding
  ☆88Updated 3 years ago
• jakob-he / string-kernel
  A python package that includes a variety of string kernel methods.
  ☆17Updated 6 years ago
• nanoporetech / currennt
  Modified fork of CURRENNT https://sourceforge.net/projects/currennt/
  ☆11Updated 9 years ago
• kishwarshafin / pepper
  PEPPER-Margin-DeepVariant
  ☆256Updated 2 years ago
• nanoporetech / taiyaki
  Training models for basecalling Oxford Nanopore reads
  ☆115Updated 4 years ago
• haotianteng / Chiron
  A basecaller for Oxford Nanopore Technologies' sequencers
  ☆121Updated 2 years ago
• nanoporetech / bonito
  A PyTorch Basecaller for Oxford Nanopore Reads
  ☆428Updated 3 weeks ago
• huangnengCSU / SACall-basecaller
  ☆16Updated 5 years ago
• aquaskyline / Clairvoyante
  Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
  ☆173Updated 2 years ago
• ljdursi / poapy
  A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes
  ☆75Updated last year
• NVIDIA-Genomics-Research / racon-gpu
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
  ☆17Updated 5 years ago
• debbiemarkslab / BEAR
  This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"
  ☆14Updated 2 years ago
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 4 years ago
• hypnopump / ClynMut
  To be a next-generation DL-based phenotype prediction from genome mutations.
  ☆19Updated 4 years ago
• kensho-technologies / sequence_align
  Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3.
  ☆75Updated 11 months ago
• nanoporetech / ont_fast5_api
  Oxford Nanopore Technologies fast5 API software
  ☆154Updated last year
• google / deepconsensus
  DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …
  ☆255Updated 10 months ago
• jeffdaily / parasail-python
  Python bindings for the parasail C library.
  ☆115Updated last year
• dnbaker / bioseq
  Tokenizers and Machine Learning Models for biological sequence data
  ☆25Updated last year
• brentp / align
  sequence alignment. global, local, glocal.
  ☆42Updated 9 years ago
• nanoporetech / remora
  Methylation/modified base calling separated from basecalling.
  ☆182Updated last year
• igordot / sns
  Analysis pipelines for genomic sequencing data
  ☆72Updated this week
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆163Updated last year