Phylotype your strains using Clermont's 2013 method: ezclermont.org
☆18May 5, 2026Updated 4 months ago
Alternatives and similar repositories for EzClermont
Users that are interested in EzClermont are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Clermont PCR method In-Silico☆27Feb 8, 2024Updated 2 years ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 11 months ago
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 3 months ago
- EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for cli…☆29Aug 9, 2026Updated last month
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆30Jul 18, 2025Updated last year
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Sep 9, 2026Updated 2 weeks ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 3 months ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆15Mar 15, 2023Updated 3 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆14Updated this week
- Methods to determine sequence element (unitig) presence/absence☆28Mar 6, 2026Updated 6 months ago
- Base for the Viral Genomics and Bioinformatics Repository☆17Jul 5, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 5 years ago
- ☆10Apr 16, 2025Updated last year
- Locus and lineage tests for bacterial GWAS☆28Oct 5, 2017Updated 8 years ago
- Generate basic stats for an assembly.☆13Feb 12, 2023Updated 3 years ago
- ☆18Jun 11, 2024Updated 2 years ago
- BSR-Based Allele Calling Algorithm☆152Sep 17, 2026Updated last week
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Mar 10, 2026Updated 6 months ago
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 8 years ago
- ☆16Jun 30, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 3 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated 2 years ago
- snakemake-powered cli to download genomes using NCBI datasets☆15Aug 14, 2025Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆51Sep 4, 2026Updated 3 weeks ago
- Interpretative standards for AMR genotypes☆31Aug 19, 2026Updated last month
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 7 months ago
- ☆28Aug 2, 2023Updated 3 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TAXnomic Profile Aggregation and STAndardisation☆45May 2, 2026Updated 4 months ago
- Five pillars of computational reproducibility☆12Feb 6, 2024Updated 2 years ago
- BRIG is a cross-platform (Windows/Mac/Linux) application that displays circular comparison images of multiple genomes using BLAST.☆52Jul 1, 2026Updated 2 months ago
- ☆16Jul 24, 2026Updated 2 months ago
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆20Aug 10, 2026Updated last month
- emm Automatic Isolate Labeller☆16Mar 25, 2025Updated last year
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 4 years ago