Alternatives and similar repositories for EzClermont

Users that are interested in EzClermont are comparing it to the libraries listed below

• A-BN / ClermonTyping
  Clermont PCR method In-Silico
  ☆22Updated last year
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆59Updated last year
• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.
  ☆49Updated last month
• rrwick / Verticall
  Recombination-free trees
  ☆60Updated this week
• tseemann / cgmlst-dists
  🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
  ☆29Updated last year
• cmmr / EsViritu
  Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
  ☆36Updated last week
• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆25Updated last month
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆96Updated 11 months ago
• iqbal-lab-org / pling
  Plasmid analysis using rearrangement distances
  ☆45Updated 3 months ago
• apcamargo / prodigal-gv
  A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes
  ☆37Updated last year
• lskatz / lyve-SET
  LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations
  ☆27Updated last year
• tseemann / phastaf
  Identify phage regions in bacterial genomes for masking purposes
  ☆34Updated 6 years ago
• jhuapl-bio / taxtriage
  TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…
  ☆57Updated 3 weeks ago
• gbouras13 / pypolca
  Standalone Python re-implementation of the POLCA polisher from MaSuRCA
  ☆38Updated 2 weeks ago
• rrwick / Rebaler
  reference-based long read assemblies of bacterial genomes
  ☆50Updated 4 years ago
• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆91Updated last month
• karel-brinda / MiniPhy
  Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]
  ☆41Updated 5 months ago
• MrTomRod / scoary-2
  Calculate assocations between genes and traits
  ☆25Updated 5 months ago
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆38Updated 2 years ago
• USDA-VS / GenoFLU
  Influenza data pipeline to automate genotyping assignment
  ☆37Updated 3 months ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆35Updated last year
• bede / hostile
  Precise host read removal
  ☆102Updated 2 months ago
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆43Updated last month
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆59Updated this week
• deprekate / PHACTS
  A simple program to classify the lifestyle of phages.
  ☆17Updated 2 years ago
• MDU-PHL / bohra
  A pipeline for bioinformatics analysis of bacterial genomes
  ☆30Updated this week
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆53Updated 4 months ago
• rrwick / Core-SNP-filter
  a tool to filter sites in a FASTA-format whole-genome pseudo-alignment
  ☆60Updated 2 months ago
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆49Updated 2 years ago
• insapathogenomics / ReporTree
  A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data
  ☆38Updated 3 months ago