Phylotype your strains using Clermont's 2013 method: ezclermont.org
☆15May 5, 2026Updated this week
Alternatives and similar repositories for EzClermont
Users that are interested in EzClermont are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Clermont PCR method In-Silico☆25Feb 8, 2024Updated 2 years ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 6 months ago
- CFSAN Shigella Typing Pipeline☆15Jul 6, 2023Updated 2 years ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆29Jul 18, 2025Updated 9 months ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 5 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated 2 months ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆15Mar 15, 2023Updated 3 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Updated this week
- BRIG is a cross-platform (Windows/Mac/Linux) application that displays circular comparison images of multiple genomes using BLAST.☆47May 1, 2026Updated last week
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 4 years ago
- Base for the Viral Genomics and Bioinformatics Repository☆17Jul 5, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Generate basic stats for an assembly.☆13Feb 12, 2023Updated 3 years ago
- Locus and lineage tests for bacterial GWAS☆28Oct 5, 2017Updated 8 years ago
- ☆18Jun 11, 2024Updated last year
- ☆15Feb 10, 2025Updated last year
- BSR-Based Allele Calling Algorithm☆149Apr 23, 2026Updated 2 weeks ago
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 7 years ago
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Methods to determine sequence element (unitig) presence/absence☆24Mar 6, 2026Updated 2 months ago
- snakemake-powered cli to download genomes using NCBI datasets☆15Aug 14, 2025Updated 8 months ago
- ☆10Apr 16, 2025Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Apr 22, 2026Updated 2 weeks ago
- ☆27Aug 2, 2023Updated 2 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 2 years ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 3 months ago
- TAXnomic Profile Aggregation and STAndardisation☆43May 2, 2026Updated last week
- Five pillars of computational reproducibility☆11Feb 6, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Sep 22, 2022Updated 3 years ago
- A genome diagram generator for microbes and organelles☆81Updated this week
- emm Automatic Isolate Labeller☆12Mar 25, 2025Updated last year
- ☆14Jun 30, 2021Updated 4 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆41Mar 31, 2026Updated last month
- Pneumococcal Capsular Typing tool for NGS data☆18Apr 6, 2021Updated 5 years ago