reichlab / variant-nowcast-hubView external linksLinks
A repository to store COVID-19 variant nowcasts collected as a modeling hub.
☆20Updated this week
Alternatives and similar repositories for variant-nowcast-hub
Users that are interested in variant-nowcast-hub are comparing it to the libraries listed below
Sorting:
- ☆13Feb 9, 2026Updated last week
- ☆11Updated this week
- ☆10Feb 9, 2026Updated last week
- ☆23Jun 6, 2025Updated 8 months ago
- ☆21Updated this week
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆50Feb 9, 2026Updated last week
- Models and infrastructure for forecasting respiratory disease hospitalizations using wastewater data with PyRenew.☆16Updated this week
- ☆10Sep 30, 2025Updated 4 months ago
- A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…☆63Feb 3, 2026Updated last week
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆27Jan 5, 2026Updated last month
- Code to test Rt estimates against synthetic data☆18Nov 30, 2020Updated 5 years ago
- ☆52Feb 6, 2026Updated last week
- US RSV Forecast Hub☆12Feb 6, 2026Updated last week
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Dec 9, 2023Updated 2 years ago
- Additional censored event tools for Distributions.jl☆14Feb 4, 2026Updated last week
- Estimate epidemiological delay distributions with brms☆15Jan 16, 2026Updated last month
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆23Updated this week
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆17Oct 31, 2024Updated last year
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated 4 months ago
- R package for real-time Rt estimation with penalized splines☆15Jan 12, 2026Updated last month
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13May 18, 2022Updated 3 years ago
- Utilities for Scoring and Assessing Predictions☆60Feb 9, 2026Updated last week
- Course on nowcasting and forecasting of infectious disease dynamics☆23Feb 9, 2026Updated last week
- A repository run by the US CDC to collect forecasts of incident COVID-19 hospital admissions and emergency department visits.☆22Updated this week
- Data and statistical models for biomarker shedding.☆15Feb 6, 2026Updated last week
- Tools for evolutionary forecasting☆14Feb 9, 2026Updated last week
- Easily combine predictions from multiple Bayesian models using techniques including (pseudo) Bayesian model averaging, hierarchical stack…☆37Dec 19, 2025Updated last month
- Data associated with the timeline of events during the 2024 H5N1 outbreak in the United States☆27Jul 17, 2024Updated last year
- Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.☆25Updated this week
- ODE modelling in Python☆30Jan 31, 2026Updated 2 weeks ago
- Repository to the R package nowcaster, nowcasting with INLA☆23Sep 20, 2025Updated 4 months ago
- Excess deaths due to COVID-19 pandemic in 2020☆11Jan 27, 2022Updated 4 years ago
- R code to replicate analyses in Clark et al 2025 (Beyond single-species models: leveraging multispecies forecasts to navigate the dynamic…☆14Feb 19, 2025Updated 11 months ago
- Applied category theory applied to epidemiological models☆12Aug 7, 2024Updated last year
- Analysis of COVID-19 transmission using cluster size distribution☆11Jun 14, 2022Updated 3 years ago
- Some code for monkeypox☆10Jan 24, 2023Updated 3 years ago
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priors☆11Apr 8, 2025Updated 10 months ago
- Influpaint : Inpainting denoising diffusion probabilistic models for infectious disease (such as influenza) forecasting☆16Jan 29, 2026Updated 2 weeks ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Sep 10, 2024Updated last year