reichlab / variant-nowcast-hub
A repository to store COVID-19 variant nowcasts collected as a modeling hub.
☆16Updated this week
Related projects ⓘ
Alternatives and complementary repositories for variant-nowcast-hub
- ☆10Updated this week
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆17Updated last week
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆15Updated this week
- R package for real-time Rt estimation with penalized splines☆13Updated this week
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆44Updated this week
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆57Updated last week
- ☆10Updated last month
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated 11 months ago
- ☆36Updated 2 weeks ago
- Course on nowcasting and forecasting of infectious disease dynamcis☆11Updated last week
- Data and forecast submission repository for the 2023 CDC West Nile virus Forecasting Challenge☆10Updated last year
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆15Updated 6 months ago
- Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.☆14Updated 2 weeks ago
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆11Updated 3 weeks ago
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated 6 months ago
- Some code for monkeypox☆10Updated last year
- ☆21Updated this week
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated last year
- R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters☆33Updated 3 weeks ago
- Data and statistical models for biomarker shedding.☆11Updated this week
- ☆14Updated last year
- Create Contact Matrices from Population Data☆18Updated 2 months ago
- ☆27Updated this week
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆16Updated last year
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- ☆28Updated last month
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆11Updated 2 years ago
- ☆17Updated 3 weeks ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- Repo for the LSHTM R Users Group (RUG)☆9Updated 3 years ago