Alternatives and similar repositories for epidemia

Users that are interested in epidemia are comparing it to the libraries listed below

• charlesm93 / disease_transmission_workflow
  Supplementary code for paper "Bayesian workflow for disease transmission model".
  ☆27Updated 4 years ago
• epiforecasts / socialmixr
  R package for deriving social mixing matrices from survey data.
  ☆40Updated this week
• hyunjimoon / SBC
  ☆61Updated this week
• epiforecasts / scoringutils
  Utilities for Scoring and Assessing Predictions
  ☆56Updated this week
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated 2 years ago
• asael697 / bayesforecast
  Automatic forecasting and Bayesian modeling for time series with Stan
  ☆46Updated 3 months ago
• nfidd / nfidd
  Course on nowcasting and forecasting of infectious disease dynamics
  ☆21Updated 2 weeks ago
• mrc-ide / individual
  R Package for individual based epidemiological models
  ☆30Updated last month
• epiforecasts / EpiNow2
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆131Updated this week
• covid19br / nowcaster
  Repository to the R package nowcaster, nowcasting with INLA
  ☆22Updated 2 weeks ago
• epiverse-trace / epiparameter
  R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…
  ☆35Updated 2 weeks ago
• bayesianops / stan-survival-model-workshop
  Building a Survival Model in Stan.
  ☆57Updated last year
• mac-theobio / McMasterPandemic
  SEIR+ model
  ☆19Updated last month
• seananderson / covidseir
  Bayesian SEIR model to estimate the effects of social-distancing on COVID-19
  ☆27Updated 4 years ago
• JuanLopezMartin / MRPCaseStudy
  An introduction to Multilevel Modeling and Poststratification (MRP) and some of its extensions.
  ☆39Updated 3 years ago
• mrc-ide / epireview
  ☆30Updated last month
• vdorie / stan4bart
  Uses Stan sampler and math library to semiparametrically fit linear and multilevel models with additive Bayesian Additive Regression Tree…
  ☆43Updated last year
• WHO-Collaboratory / collaboratory-epiparameter-community
  ☆41Updated 3 weeks ago
• ssp3nc3r / rethinking
  Examples from McElreath's Statistical Rethinking, First edition coded in Stan.
  ☆50Updated 6 years ago
• spinkney / helpful_stan_functions
  ☆77Updated 2 years ago
• rmcelreath / elements_evolutionary_anthropology
  Text project for theoretical primer on human evolutionary ecology
  ☆35Updated 2 years ago
• vcbradley / ddc-vaccine-US
  Repo for code for "Unrepresentative Surveys Significantly Overestimate Vaccine Uptake in the US"
  ☆14Updated 3 years ago
• bgoodri / StanCon2020
  Material for my proposed StanCon talk
  ☆20Updated 4 years ago
• kaskr / tmbstan
  ☆32Updated 7 months ago
• vincentarelbundock / rethinking2
  ☆81Updated 2 years ago
• idem-lab / conmat
  Create Contact Matrices from Population Data
  ☆20Updated 2 weeks ago
• mrc-ide / sircovid
  ☆29Updated 2 months ago
• appliedepi / epirhandbook
  An R package to accompany the Epidemiology R Handbook, a free open-access R reference manual for applied epidemiologists and public healt…
  ☆48Updated 4 months ago
• mrc-ide / squire
  SEIR transmission model of COVID-19. Documentation at:
  ☆51Updated last year
• EpiModel / EpiModel-Gallery
  Gallery of Network-Based Epidemic Model Templates for EpiModel
  ☆55Updated 10 months ago