Alternatives and similar repositories for ngless

Users that are interested in ngless are comparing it to the libraries listed below

• kaizhang / bioinformatics-toolkit
  A collection of bioinformatics algorithms
  ☆12Updated 3 years ago
• PapenfussLab / bioshake
  Bioinformatics pipelines with Haskell and Shake
  ☆56Updated 6 years ago
• bredelings / BAli-Phy
  Bayesian co-estimation of phylogenies and multiple alignments via MCMC
  ☆48Updated last week
• eggzilla / RNAlien
  RNAlien - unsupervised RNA family model construction
  ☆13Updated 4 years ago
• dnbaker / dashing
  Fast and accurate genomic distances using HyperLogLog
  ☆162Updated 2 years ago
• COMBINE-lab / pufferfish
  An efficient index for the colored, compacted, de Bruijn graph
  ☆109Updated last year
• dschrempf / mcmc-date
  Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.
  ☆11Updated 4 months ago
• xutaodeng / EnsembleAssembler
  EnsembleAssembler performs de novo assembly of pathogen genomes from metagenomic samples sequenced using Illumina platforms
  ☆10Updated 10 years ago
• marbl / MHAP
  MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities
  ☆98Updated 3 years ago
• seqan / lambda
  LAMBDA – the Local Aligner for Massive Biological DatA
  ☆81Updated last year
• matsen / pplacer
  Phylogenetic placement and downstream analysis
  ☆87Updated 2 months ago
• khyox / recentrifuge
  Recentrifuge: robust comparative analysis and contamination removal for metagenomics
  ☆98Updated 6 months ago
• thegenemyers / DALIGNER
  Find all significant local alignments between reads
  ☆141Updated last year
• revbayes / revbayes.archive
  ☆68Updated 2 years ago
• qiita-spots / qiita
  Qiita - A multi-omics databasing effort
  ☆127Updated 2 months ago
• Taiji-pipeline / Taiji
  All-in-one analysis pipeline
  ☆36Updated last year
• isovic / graphmap
  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…
  ☆181Updated 6 years ago
• dnbaker / bonsai
  Bonsai: Fast, flexible taxonomic analysis and classification
  ☆71Updated last year
• ncbi / ngs-tools
  ☆107Updated last week
• brentp / goleft
  goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
  ☆224Updated last month
• KamilSJaron / smudgeplot
  Inference of ploidy and heterozygosity structure using whole genome sequencing data
  ☆281Updated last month
• bcgsc / arcs
  🌈Scaffold genome sequence assemblies using linked or long read sequencing data
  ☆95Updated 11 months ago
• pmelsted / bifrost
  Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
  ☆219Updated last week
• stschiff / sequenceTools
  ☆50Updated 5 months ago
• Cibiv / IQ-TREE
  Efficient phylogenomic software by maximum likelihood
  ☆203Updated 3 years ago
• bokulich-lab / RESCRIPt
  REference Sequence annotation and CuRatIon Pipeline
  ☆97Updated this week
• benjaminhgood / LTEE-metagenomic
  Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli
  ☆22Updated 6 years ago
• marbl / metAMOS
  A metagenomic and isolate assembly and analysis pipeline built with AMOS
  ☆94Updated 7 years ago
• faircloth-lab / phyluce
  software for UCE (and general) phylogenomics
  ☆84Updated 7 months ago
• brentp / smoove
  structural variant calling and genotyping with existing tools, but, smoothly.
  ☆258Updated last year