NGLess: NGS with less work
☆152Oct 9, 2026Updated 3 weeks ago
Alternatives and similar repositories for ngless
Users that are interested in ngless are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Profiler for metagenomics based on NGLess☆14Feb 22, 2024Updated 2 years ago
- A collection of bioinformatics algorithms☆12Aug 20, 2022Updated 4 years ago
- strain-level analysis tools☆41Oct 21, 2024Updated 2 years ago
- So, you want to write a DSL interpreter...☆26Nov 20, 2018Updated 7 years ago
- A thread-safe hash table in Haskell☆15Feb 28, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆45Apr 8, 2024Updated 2 years ago
- Protal is tool for taxonomic profiling from whole-genome shotgun sequencing data. With GTDB marker genes as reference, protal is able to …☆16Aug 10, 2026Updated 2 months ago
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 3 years ago
- Merged into ian repo: https://github.com/seagreen/ian#llvm-in-haskell☆17Apr 13, 2019Updated 7 years ago
- Haskell port of the Tensor Algebra COmpiler☆16Nov 18, 2019Updated 6 years ago
- MIcrobiomes using Compressive Acceleration☆17Feb 10, 2018Updated 8 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 3 years ago
- ☆20Feb 13, 2016Updated 10 years ago
- Map and Set over contiguous memory☆22Aug 9, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- motus - a tool for marker gene-based OTU (mOTU) profiling☆188Jul 17, 2026Updated 3 months ago
- Predict AMPs in (meta)genomes and peptides☆98Jul 19, 2026Updated 3 months ago
- An embedded DSL for creating, composing, and using probability measures.☆43Sep 10, 2019Updated 7 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- Pilea: profiling bacterial growth dynamics from metagenomes with sketching☆13Oct 21, 2026Updated last week
- ☆12Dec 22, 2025Updated 10 months ago
- Model of baysig language in Haskell (minus estimate)☆15Jun 23, 2016Updated 10 years ago
- A SAT-Sampler aided language for experimental design, targeted for Psychology & Neuroscience☆19May 4, 2018Updated 8 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Snakemake pipeline for amplicon sequencing using dada2☆10Jul 17, 2023Updated 3 years ago
- ☆44Nov 20, 2021Updated 4 years ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆97Oct 9, 2025Updated last year
- Haskell numerical ODE solvers☆13Aug 21, 2017Updated 9 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆31Sep 12, 2023Updated 3 years ago
- Haskell graphs and networks library☆31Jun 17, 2026Updated 4 months ago
- Show, plot and compare benchmark results☆16May 14, 2026Updated 5 months ago
- An analysis and visualization platform for 'omics data☆545Updated this week
- ☆12Feb 22, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Julia embedded in Haskell☆51Dec 14, 2024Updated last year
- Customizable workflows based on snakemake and python for the analysis of NGS data☆404Oct 21, 2026Updated last week
- Simplify and render Template Haskell☆18Aug 19, 2018Updated 8 years ago
- Linking MAGs with 16S rRNA marker genes☆27Feb 8, 2025Updated last year
- ☆15Jun 23, 2026Updated 4 months ago
- DiffusionKinetics open-source monorepo☆117Jan 10, 2023Updated 3 years ago
- Declare and access tuple fields with labels☆58Jan 2, 2019Updated 7 years ago