Alternatives and similar repositories for ngless:

Users that are interested in ngless are comparing it to the libraries listed below

• eggzilla / RNAlien
  RNAlien - unsupervised RNA family model construction
  ☆14Updated 3 years ago
• bredelings / BAli-Phy
  Bayesian co-estimation of phylogenies and multiple alignments via MCMC
  ☆47Updated this week
• PapenfussLab / bioshake
  Bioinformatics pipelines with Haskell and Shake
  ☆56Updated 5 years ago
• kaizhang / bioinformatics-toolkit
  A collection of bioinformatics algorithms
  ☆12Updated 2 years ago
• bcgsc / arcs
  🌈Scaffold genome sequence assemblies using linked or long read sequencing data
  ☆93Updated 4 months ago
• marbl / MHAP
  MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities
  ☆96Updated 2 years ago
• dnbaker / dashing
  Fast and accurate genomic distances using HyperLogLog
  ☆160Updated 2 years ago
• ANGSD / angsd
  Program for analysing NGS data.
  ☆235Updated 3 weeks ago
• brentp / goleft
  goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
  ☆219Updated 6 months ago
• isovic / graphmap
  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…
  ☆182Updated 5 years ago
• COMBINE-lab / pufferfish
  An efficient index for the colored, compacted, de Bruijn graph
  ☆107Updated 5 months ago
• Kingsford-Group / bloomtree
  ☆73Updated 6 years ago
• KamilSJaron / smudgeplot
  Inference of ploidy and heterozygosity structure using whole genome sequencing data
  ☆262Updated last month
• bedops / bedops
  BEDOPS: high-performance genomic feature operations
  ☆319Updated last year
• ncbi / ngs-tools
  ☆106Updated last week
• schatzlab / genomescope
  Fast genome analysis from unassembled short reads
  ☆284Updated 11 months ago
• getzlab / rnaseqc
  Fast, efficient RNA-Seq metrics for quality control and process optimization
  ☆160Updated 4 months ago
• fbreitwieser / krakenuniq
  🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
  ☆231Updated last year
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆153Updated 2 years ago
• ncbi / TPMCalculator
  TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
  ☆129Updated 9 months ago
• Ensembl / WiggleTools
  Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency
  ☆147Updated 4 months ago
• brentp / smoove
  structural variant calling and genotyping with existing tools, but, smoothly.
  ☆248Updated 9 months ago
• seqan / lambda
  LAMBDA – the Local Aligner for Massive Biological DatA
  ☆78Updated 7 months ago
• jts / sga
  de novo sequence assembler using string graphs
  ☆241Updated 5 years ago
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆139Updated this week
• shenwei356 / kmcp
  Accurate metagenomic profiling && Fast large-scale sequence/genome searching
  ☆187Updated last year
• ncbi / SKESA
  SKESA assembler
  ☆115Updated 5 months ago
• ryanlayer / gqt
  A genotype query interface.
  ☆135Updated 3 years ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆197Updated 7 months ago
• sunbeam-labs / sunbeam
  A robust, extensible metagenomics pipeline
  ☆169Updated 7 months ago