kaizhang / bioinformatics-toolkit
A collection of bioinformatics algorithms
☆12Updated 2 years ago
Alternatives and similar repositories for bioinformatics-toolkit:
Users that are interested in bioinformatics-toolkit are comparing it to the libraries listed below
- Bayesian co-estimation of phylogenies and multiple alignments via MCMC☆47Updated this week
- Bioinformatics pipelines with Haskell and Shake☆55Updated 5 years ago
- RNAlien - unsupervised RNA family model construction☆14Updated 3 years ago
- All-in-one analysis pipeline☆35Updated 5 months ago
- NGLess: NGS with less work☆145Updated 6 months ago
- Octree is a shallow tree structure for 3-dimensional points☆20Updated 4 years ago
- Scientific workflow management☆51Updated 2 years ago
- Set of tools for viral metagenomics.☆14Updated this week
- Functional highly reproducible bioinformatics pipelines☆87Updated 3 months ago
- Explore and analyze biological sequence data☆16Updated 6 months ago
- PDB parser in Haskell☆21Updated last year
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆11Updated 8 months ago
- Temporal Pathway Synthesizer☆17Updated 7 months ago
- De Bruijn graph representation in low memory☆36Updated 7 months ago
- Arioc: GPU-accelerated DNA short-read alignment☆67Updated last month
- Wiki form of BLAST documentation from NCBI☆16Updated 8 years ago
- Model of baysig language in Haskell (minus estimate)☆15Updated 8 years ago
- guix packages for bioinformatics software☆23Updated last year
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆32Updated 11 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆31Updated 2 months ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Updated 10 months ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆25Updated 6 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated 11 months ago
- De Bruijn graphs in Rust☆66Updated 6 months ago
- C++ library for parsing several formats in bioinformatics☆9Updated last year
- Small general purpose library for C and Python with focus on bioinformatics.☆29Updated 2 years ago
- reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)☆48Updated 6 years ago
- exploring viral genome assembly with variation graph tools☆19Updated 4 years ago
- Short Read Connector (SRC)☆9Updated 2 years ago
- Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli☆23Updated 5 years ago