eggzilla / RNAlien

Related projects ⓘ

Alternatives and complementary repositories for RNAlien

• bredelings / BAli-Phy
  Bayesian co-estimation of phylogenies and multiple alignments via MCMC
  ☆46Updated this week
• kaizhang / bioinformatics-toolkit
  A collection of bioinformatics algorithms
  ☆12Updated 2 years ago
• Taiji-pipeline / Taiji
  All-in-one analysis pipeline
  ☆34Updated 2 months ago
• incertae-sedis / smof
  Explore and analyze biological sequence data
  ☆16Updated 3 months ago
• benjaminhgood / LTEE-metagenomic
  Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli
  ☆23Updated 5 years ago
• csiro-crop-informatics / biokanga
  An integrated high performance bioinformatics toolkit
  ☆23Updated 5 years ago
• tlawrence3 / FAST
  FAST: Fast Analysis of Sequences Toolbox
  ☆31Updated 5 years ago
• khyox / recentrifuge
  Recentrifuge: robust comparative analysis and contamination removal for metagenomics
  ☆86Updated last month
• HadrienG / taxadb
  locally query the ncbi taxonomy
  ☆39Updated last year
• skoblov-lab / spliceai-reforged
  A GPU-friendly implementation of SpliceAI
  ☆10Updated last year
• transXpress / transXpress
  transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation
  ☆25Updated 8 months ago
• cbg-ethz / haploclique
  Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…
  ☆25Updated 6 years ago
• rvosa / bio-phylo
  Bio::Phylo - Phyloinformatic analysis using Perl
  ☆16Updated 5 years ago
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆63Updated 4 months ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated 9 months ago
• DuttonLab / kvasir
  Searching for Horizontal Gene Transfer
  ☆11Updated 4 years ago
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆31Updated last year
• TravisWheelerLab / AvxWindowFmIndex
  A fast, AVX2 and ARM Neon accelerated FM index library
  ☆31Updated 3 months ago
• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆51Updated 8 months ago
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆27Updated last month
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆30Updated 8 years ago
• cmmr / virmap
  ☆25Updated 3 years ago
• stschiff / sequenceTools
  ☆41Updated last week
• grenaud / gargammel
  gargammel is an ancient DNA simulator
  ☆26Updated 4 months ago
• chasewnelson / OLGenie
  Program for estimating dN/dS in overlapping genes (OLGs)
  ☆13Updated last year
• iqtree / decenttree
  Fast Neighbor-Joining and other distance-based methods for phylogenetics
  ☆10Updated 5 months ago
• s-will / LocARNA
  Alignment of RNAs
  ☆24Updated 3 months ago
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 5 years ago
• WGS-standards-and-analysis / datasets
  Benchmark datasets for WGS analysis
  ☆37Updated 5 years ago