Alternatives and similar repositories for RNAlien

Users that are interested in RNAlien are comparing it to the libraries listed below

• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆117Updated 5 years ago
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆41Updated 5 years ago
• ngless-toolkit / ngless
  NGLess: NGS with less work
  ☆151Updated 10 months ago
• mpdunne / alan
  Alignment viewer for linux terminal
  ☆124Updated 4 months ago
• usegalaxy-eu / website
  UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)
  ☆22Updated this week
• biologyguy / BuddySuite
  Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
  ☆129Updated 4 years ago
• usegalaxy-eu / usegalaxy-eu-tools
  List of tools included in https://usegalaxy.eu
  ☆34Updated last week
• epruesse / SINA
  SINA - Reference based multiple sequence alignment
  ☆41Updated 5 years ago
• EBI-Metagenomics / MGnifyR
  R package for searching, downloading and analysis of EBI MGnify metagenomics data
  ☆23Updated 3 weeks ago
• uym2 / MinVar-Rooting
  Linear-time rooting of phylogenetic trees
  ☆17Updated 2 years ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆163Updated last year
• alesssia / YAMP
  YAMP: Yet Another Metagenomic Pipeline
  ☆62Updated 2 years ago
• matsen / pplacer
  Phylogenetic placement and downstream analysis
  ☆89Updated 2 weeks ago
• BackofenLab / IntaRNA
  Efficient target prediction incorporating accessibility of interaction sites
  ☆49Updated 4 months ago
• vsbuffalo / scythe
  A 3'-end adapter contaminant trimmer
  ☆95Updated 8 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆151Updated last week
• biocore / q2-greengenes2
  A QIIME 2 plugin for interaction with the Greengenes2 database
  ☆33Updated last year
• galaxyproject / gxadmin
  Handy command line utility for Galaxy administrators
  ☆24Updated 4 months ago
• benjaminhgood / LTEE-metagenomic
  Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli
  ☆23Updated 6 years ago
• cmdcolin / oddgenes
  A small database of weird gene annotations
  ☆205Updated last month
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆176Updated this week
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆93Updated 5 months ago
• jfallmann / MONSDA
  MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis
  ☆12Updated last week
• bokulich-lab / RESCRIPt
  REference Sequence annotation and CuRatIon Pipeline
  ☆98Updated last week
• ialbert / bio
  Making bioinformatics fun again
  ☆74Updated last month
• galaxyproject / planemo
  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…
  ☆95Updated last week
• khyox / recentrifuge
  Recentrifuge: robust comparative analysis and contamination removal for metagenomics
  ☆99Updated 3 weeks ago
• husonlab / megan-ce
  MEGAN Community Edition
  ☆72Updated last year
• caporaso-lab / mockrobiota
  A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.
  ☆83Updated 6 years ago
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆51Updated 3 years ago