netZoo / netZooCLinks
netZooC is a network biology package implemented in C.
☆26Updated 2 months ago
Alternatives and similar repositories for netZooC
Users that are interested in netZooC are comparing it to the libraries listed below
Sorting:
- netZooM is a network biology package implemented in MATLAB.☆28Updated 3 months ago
- netZooR is a network biology package implemented in R.☆112Updated 2 weeks ago
- R package to access DoRothEA's regulons☆149Updated last year
- ☆33Updated 3 years ago
- Differential expression analysis for single-cell RNA-seq data.☆201Updated 5 months ago
- Bench-marking classification tools for scRNA-seq data☆186Updated 3 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆95Updated 4 years ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆156Updated 2 weeks ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆137Updated 2 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆192Updated 2 years ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆145Updated 8 months ago
- Python package to perform enrichment analysis from omics data.☆216Updated this week
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- netZooPy is a network biology package implemented in Python.☆89Updated last month
- A Bayesian model for compositional single-cell data analysis☆172Updated 2 years ago
- Tools for single-cell data processing☆126Updated last year
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆165Updated 2 months ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆112Updated 9 months ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆140Updated last year
- Clonotype Neighbor Graph Analysis☆90Updated this week
- BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis☆50Updated 2 months ago
- ☆65Updated last year
- A continually expanding collection of cancer genomics notes and data☆107Updated 2 weeks ago
- chromatin Variability Across Regions (of the genome!)☆179Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆165Updated 4 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- pseudobulking on an AnnData object☆33Updated 4 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆114Updated 3 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆92Updated 6 years ago