ncbi / blast_plus_docs

Related projects ⓘ

Alternatives and complementary repositories for blast_plus_docs

• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…
  ☆149Updated last week
• timflutre / trimmomatic
  Read trimming tool for Illumina NGS data.
  ☆127Updated 9 years ago
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆151Updated this week
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆144Updated 3 weeks ago
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆159Updated this week
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆134Updated last year
• ncbi / amr
  AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…
  ☆269Updated last week
• antismash / antismash
  antiSMASH
  ☆186Updated last week
• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆299Updated last week
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆313Updated 2 weeks ago
• nf-core / viralrecon
  Assembly and intrahost/low-frequency variant calling for viral samples
  ☆123Updated this week
• sortmerna / sortmerna
  SortMeRNA: next-generation sequence filtering and alignment tool
  ☆245Updated last month
• simon-anders / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆122Updated 4 years ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆322Updated 2 months ago
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆198Updated this week
• nextflow-io / training
  Nextflow training material
  ☆127Updated this week
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆93Updated this week
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆171Updated this week
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆230Updated this week
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆204Updated 4 months ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆211Updated 3 years ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆282Updated 2 weeks ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆107Updated 4 years ago
• cbg-ethz / V-pipe
  V-pipe is a pipeline designed for analysing NGS data of short viral genomes
  ☆132Updated last week
• moshi4 / pyGenomeViz
  A genome visualization python package for comparative genomics
  ☆280Updated 2 weeks ago
• weberlab-hhu / Helixer
  Using Deep Learning to predict gene annotations
  ☆165Updated this week
• getzlab / rnaseqc
  Fast, efficient RNA-Seq metrics for quality control and process optimization
  ☆149Updated last week
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆111Updated 2 months ago
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆176Updated 3 weeks ago
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆140Updated 5 months ago