mostafajahanifar / nuclick_torch
Pytorch implementation of NuClick for interactive cell segmentation
☆26Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for nuclick_torch
- Pipeline for computational pathology☆34Updated 10 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆80Updated 4 months ago
- Interactive Segmentation of Nucleus☆60Updated last year
- Python 3 library for the augmentation & normalization of H&E images☆51Updated 2 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆67Updated last year
- Some stain normalization code☆85Updated 2 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆52Updated last year
- Whole Slide image (WSI) conversion for brightfield histology images☆32Updated 3 weeks ago
- One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification☆72Updated 8 months ago
- Virtual Alignment of pathoLogy Image Series☆122Updated 2 months ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆65Updated last year
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆93Updated this week
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆18Updated 7 months ago
- Histopathology Image Analysis☆90Updated last year
- StainNet: a fast and robust stain normalization network☆47Updated 2 years ago
- ☆49Updated 2 years ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆28Updated 9 months ago
- Solid Tumor Associative Modeling in Pathology☆47Updated last month
- Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…☆42Updated this week
- List of pathology feature extractors and foundation models☆57Updated this week
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆64Updated 9 months ago
- ☆53Updated last month
- Awesome Domain Generalization for Computational Pathology☆11Updated this week
- Pytorch implementation of Self Attentive Adversarial Stain Normalization (SAASN).☆13Updated last year
- ⚡ Open-source software for deep learning-based digital pathology☆122Updated 4 months ago
- Toolbox for measuring adversarial robustness to many transforms☆19Updated last year
- A Python library for deep learning on whole-slide images☆50Updated 3 years ago
- Tools to build deep learning pipelines.☆84Updated 2 months ago
- Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourc…☆140Updated 2 years ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆45Updated 2 years ago