CielAl / torch-staintools
Pytorch-adaptation of GPU-accelerated StainTool's stain normalization algorithms
☆26Updated last year
Alternatives and similar repositories for torch-staintools:
Users that are interested in torch-staintools are comparing it to the libraries listed below
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆68Updated last year
- DeeperHistReg - Source Code☆51Updated 11 months ago
- Histopathology Image Analysis☆93Updated last year
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆66Updated 2 years ago
- Gpu accelerated vahadane stain normalization for Digital Pathology workflows.☆25Updated last year
- ☆13Updated 4 months ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆24Updated 11 months ago
- Some stain normalization code☆88Updated 2 years ago
- Stain normalization tools for histological analysis and computational pathology☆135Updated 2 months ago
- ☆52Updated 3 years ago
- StainNet: a fast and robust stain normalization network☆46Updated 3 years ago
- Tools to build deep learning pipelines.☆96Updated 4 months ago
- List of pathology feature extractors and foundation models☆111Updated 2 months ago
- End-to-end pipeline to go from raw H&E slides to normalised extracted features for training☆25Updated last year
- Re-stained whole slide image alignment☆32Updated last year
- ☆50Updated last year
- Virtual Alignment of pathoLogy Image Series☆149Updated 3 months ago
- Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…☆49Updated 3 months ago
- Python library for processing whole slide images (WSIs) in sdpc format☆51Updated 2 months ago
- ☆35Updated 2 years ago
- Encoder-Decoder Cell and Nuclei segmentation models☆89Updated last month
- Implementation of LA_MIL, Local Attention Graph-based Transformer for WSIs, PyTorch☆25Updated last year
- ☆30Updated last week
- Pipeline for computational pathology☆34Updated last year
- H&E histopathological staining normalization☆107Updated 5 years ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆54Updated 2 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆98Updated 4 months ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆35Updated last month
- This repo provides the pipeline of processing TCGA whole-slide images for downstream pathology analysis.☆62Updated last week
- Toolkit for large-scale whole-slide image processing.☆156Updated this week