Alternatives and similar repositories for molgenis-emx2

Users that are interested in molgenis-emx2 are comparing it to the libraries listed below

• ga4gh-beacon / beacon-v2
  Unified repository for the GA4GH Beacon v2 API standard
  ☆29Updated this week
• fairgenomes / fairgenomes-semantic-model
  FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.
  ☆12Updated 4 months ago
• PharmGKB / pgkb-ngs-pipeline
  PharmGKB NGS Pipeline
  ☆17Updated 6 years ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• TheJacksonLaboratory / hpo-web
  a web application to search and navigate the Human Phenotype Ontology (HPO)
  ☆14Updated last month
• adamstruck / cwl2wdl
  Convert CWL to WDL
  ☆17Updated 8 years ago
• OHDSI / Genomic-CDM
  Repository for development of the genomic module of the CDM.
  ☆20Updated 6 years ago
• ccmbioinfo / crg2
  Research pipeline for exploring clinically relevant genomic variants
  ☆16Updated this week
• ELIXIR-Belgium / ena-upload-container
  This is a repository to build a Galaxy container which can be used to remove human traces from sequence reads and upload raw SARS-Cov-2 s…
  ☆10Updated last year
• arpcard / aro
  The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …
  ☆18Updated 3 weeks ago
• biocompute-objects / BCO_Documentation
  Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:
  ☆17Updated 11 months ago
• Steven-N-Hart / vcf-miner
  VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files
  ☆37Updated 5 years ago
• opencb / iva
  Generic Interactive Variant Analysis browser
  ☆29Updated 3 years ago
• genepi / mtdna-server-2
  mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes
  ☆15Updated 5 months ago
• MultiQC / test-data
  Test data for MultiQC.
  ☆22Updated 3 weeks ago
• earlham-sherlock / earlham-sherlock.github.io
  an open source data platform, developed in the Korcsmaros Group to store, analyze and integrate bioinformatics data
  ☆11Updated 4 years ago
• ga4gh / wiki
  a place for GA4GH-related wiki pages
  ☆16Updated 7 years ago
• JaneliaSciComp / nextflow-spark
  ☆15Updated 2 months ago
• monarch-initiative / Squirls
  Interpretable prioritization of splice variants in diagnostic next-generation sequencing
  ☆17Updated last year
• stjudecloud / wdldoc
  Create WDL documentation using Markdown.
  ☆27Updated this week
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆59Updated last week
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆18Updated 6 years ago
• PapenfussLab / PathOS
  PathOS is a clinical application for filtering, analysing and reporting on NGS variants
  ☆28Updated 4 years ago
• dnanexus / wdlTools
  WDL tools for parsing, type-checking, and more
  ☆25Updated 2 months ago
• NBISweden / development-guidelines
  Development guidlines for software within NBIS.
  ☆18Updated 2 weeks ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆19Updated last year
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆43Updated last year
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆14Updated 4 years ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 3 years ago
• quinlan-lab / bedqc
  BED QC tool (in the making)
  ☆16Updated 2 years ago