ml-jku / DeepRCLinks
DeepRC: Immune repertoire classification with attention-based deep massive multiple instance learning
☆125Updated 2 years ago
Alternatives and similar repositories for DeepRC
Users that are interested in DeepRC are comparing it to the libraries listed below
Sorting:
- Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)☆73Updated 2 years ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆88Updated 3 years ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆99Updated 3 years ago
- Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences☆31Updated 4 years ago
- ☆19Updated 2 years ago
- The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRN…☆150Updated 4 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 4 years ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell lev…☆184Updated 2 years ago
- Protein function prediction using a variational autoencoder☆94Updated 7 years ago
- Language modeling of viral evolution☆148Updated 2 years ago
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆305Updated 9 months ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆76Updated 5 years ago
- Fitness landscape exploration sandbox for biological sequence design.☆170Updated 2 years ago
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆16Updated 3 years ago
- Reimplementation of the UniRep protein featurization model.☆108Updated last year
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆59Updated 3 years ago
- Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.☆106Updated 2 months ago
- Machine Learning for Genomics and Therapeutics Resources (Cell Patterns)☆80Updated 4 years ago
- ☆110Updated 3 years ago
- The starter repository for submissions to the GeneDisco challenge for optimized experimental design in genetic perturbation experiments.☆24Updated 3 years ago
- Equivariant layers for RC-complement symmetry in DNA sequence data☆12Updated 3 years ago
- Starter repository for submissions to the CausalBench challenge for gene-gene graph inference from genetic perturbation experiments.☆32Updated 2 years ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆42Updated last year
- A generative latent variable model for biological sequence families.☆247Updated 3 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆121Updated 4 years ago
- Implementation of ProteinBERT in Pytorch☆164Updated 4 years ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆113Updated 4 years ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Updated 4 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- End-to-end RNA Design using deep reinforcement learning☆72Updated 3 years ago