ml-jku / DeepRCLinks
DeepRC: Immune repertoire classification with attention-based deep massive multiple instance learning
☆119Updated last year
Alternatives and similar repositories for DeepRC
Users that are interested in DeepRC are comparing it to the libraries listed below
Sorting:
- Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)☆72Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell lev…☆179Updated last year
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆85Updated 3 years ago
- Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences☆30Updated 3 years ago
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆301Updated 3 months ago
- The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRN…☆148Updated 3 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆73Updated 4 years ago
- Protein function prediction using a variational autoencoder☆94Updated 7 years ago
- Reimplementation of the UniRep protein featurization model.☆107Updated 11 months ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆98Updated 2 years ago
- Fitness landscape exploration sandbox for biological sequence design.☆165Updated 2 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆120Updated 4 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.☆104Updated 2 months ago
- ☆19Updated 2 years ago
- Drug Response Variational Autoencoder☆31Updated 6 years ago
- The starter repository for submissions to the GeneDisco challenge for optimized experimental design in genetic perturbation experiments.☆24Updated 3 years ago
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆17Updated 3 years ago
- Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)☆96Updated 3 years ago
- PyTorch library of layers acting on protein representations☆119Updated last year
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆58Updated 2 years ago
- learning biology syllabus, geared for machine learning folks☆116Updated 2 years ago
- DCell browser and gene deletion simulator☆123Updated 2 years ago
- A generative latent variable model for biological sequence families.☆233Updated 3 years ago
- A convolutional neural network to predict PPI interactions☆42Updated 6 years ago
- Starter repository for submissions to the CausalBench challenge for gene-gene graph inference from genetic perturbation experiments.☆31Updated 2 years ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆113Updated last year
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Updated 4 years ago
- Exploring the space of drug combinations to discover synergistic drugs using Active Learning☆24Updated last year
- Deep Graph Mapper: Seeing Graphs through the Neural Lens☆58Updated 2 years ago