CoGO: a contrastive learning framework to predict disease similarity based on gene network and ontology structure
☆16Sep 30, 2024Updated 2 years ago
Alternatives and similar repositories for CoGO
Users that are interested in CoGO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 5 years ago
- ☆10Nov 11, 2024Updated last year
- ☆13Oct 24, 2021Updated 5 years ago
- ☆16Feb 21, 2022Updated 4 years ago
- Pinterest dataset released with the paper "Learning Image and User Features for Recommendation in Social Networks" by Xue Geng et al. in …☆12Jan 4, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Deep Learning For Biological Sequence Data: From Convolutional Neural Networks To Transformers, our tutorial into DL presented at 21st Eu…☆10Sep 20, 2022Updated 4 years ago
- Variant impact phenotyping using Perturb-seq☆10Apr 22, 2024Updated 2 years ago
- ☆14Aug 18, 2023Updated 3 years ago
- ☆20May 20, 2021Updated 5 years ago
- Deep Generative Modeling of RNA Velocity☆41Oct 21, 2025Updated last year
- scID☆14Oct 21, 2021Updated 5 years ago
- Prediction of mRNA subcellular localization using deep recurrent neural networks☆15Jul 19, 2019Updated 7 years ago
- Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)☆62Apr 3, 2024Updated 2 years ago
- Simulate pseudo-bulk RNAseq samples from scRNAseq expression data☆19Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated 3 months ago
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆55Apr 15, 2025Updated last year
- Perturb-seq analysis package☆16May 2, 2024Updated 2 years ago
- Implementation of entropy of mixing algorithm in python☆10Oct 19, 2022Updated 4 years ago
- MIMIC preprocessing for the ICML paper "Dynamic Measurement Scheduling for Event Forecasting Using Deep RL"☆18May 16, 2019Updated 7 years ago
- ☆89Jun 24, 2023Updated 3 years ago
- Automatically download midi files on midishow☆27Aug 4, 2026Updated 3 months ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated 2 years ago
- KGANCDA is effective to predict associations between circRNA and cancer, which is based on knowledge graph attention network. The detail …☆13Dec 12, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 4 years ago
- ☆20Sep 13, 2022Updated 4 years ago
- ☆12Jul 13, 2018Updated 8 years ago
- ☆101Aug 12, 2024Updated 2 years ago
- Cell2location paper - Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics☆15Nov 26, 2022Updated 3 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆101Nov 24, 2020Updated 5 years ago
- Benchmarking computational doublet-detection methods for single-cell RNA sequencing data☆10Feb 25, 2021Updated 5 years ago
- This code reproduces the results presented in the paper "DAEMA: Denoising Autoencoder with Mask Attention" accepted at the ICANN 2021 con…☆14Aug 31, 2021Updated 5 years ago
- ☆31Apr 1, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆27Aug 5, 2026Updated 3 months ago
- CopyBench: Measuring Literal and Non-Literal Reproduction of Copyright-Protected Text in Language Model Generation☆14Aug 19, 2025Updated last year
- Implementation of AEMDA for inferring potential disease-miRNA associations.☆13Apr 13, 2021Updated 5 years ago
- A Transformer Architecture Based on BERT and 2D Convolutional Neural Network to Identify DNA Enhancers from Sequence Information☆27May 4, 2022Updated 4 years ago
- ☆12Feb 29, 2020Updated 6 years ago
- Single-cell biological network inference using a heterogeneous graph transformer☆78Feb 24, 2025Updated last year
- ☆13Feb 12, 2024Updated 2 years ago