Alternatives and similar repositories for CoGO

Users that are interested in CoGO are comparing it to the libraries listed below

• QSong-github / SiGra
  Single-cell spatial elucidation through image-augmented graph transformer
  ☆32Updated last year
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆73Updated 4 months ago
• yhr91 / GEARS_misc
  ☆20Updated 8 months ago
• zpliulab / GENELink
  ☆33Updated 2 years ago
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆62Updated 2 years ago
• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆35Updated 8 months ago
• Philyzh8 / scTAG
  "ZINB-based Graph Embedding Autoencoder for Single-cell RNA-seq Interpretations" in AAAI 2022
  ☆22Updated 2 years ago
• jsxlei / scCLIP
  ☆29Updated last year
• zhanglab-wbgcas / STGRNS
  ☆29Updated 2 years ago
• ml4bio / CLEAR
  CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis
  ☆33Updated 2 years ago
• kodaim1115 / scMM
  ☆17Updated 3 years ago
• OmicsML / scMoFormer
  Single-Cell Multimodal Prediction via Transformer
  ☆28Updated last year
• HantaoShu / DeepSEM
  ☆82Updated 2 years ago
• sunyolo / DeepTFni
  A VGAE-based model to infer transcription factor regulatory network
  ☆27Updated 2 years ago
• zhaofangyuan98 / SDMBench
  ☆37Updated last year
• QIFEIDKN / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆46Updated 2 years ago
• DHUDBlab / scDSC
  ☆21Updated 3 years ago
• myzhengSIMM / TranSiGen
  ☆30Updated 5 months ago
• Joye9285 / scGAC
  single-cell graph attentional clustering
  ☆12Updated 3 years ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆94Updated 3 months ago
• melobio / Concerto-reproducibility
  ☆38Updated 2 years ago
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆70Updated last week
• wehos / CellT
  An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"
  ☆17Updated last year
• rsinghlab / scNODE
  scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction
  ☆21Updated 8 months ago
• kimmo1019 / JAE
  Single cell joint embedding and modality prediction with autoencoder
  ☆9Updated 2 years ago
• cmzuo11 / scMVAE
  Deep joint-leaning single-cell multi-omics model
  ☆16Updated 2 years ago
• JinmiaoChenLab / GraphST
  ☆120Updated last year
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 2 years ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆34Updated last month
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆50Updated 3 years ago