Python implementation of de Bruijn graph for genome assembly
☆13May 24, 2014Updated 12 years ago
Alternatives and similar repositories for py-debruijn
Users that are interested in py-debruijn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficient UPGMA implementation☆11Jul 1, 2014Updated 12 years ago
- A basic implementation of the UPGMA (Unweighted Pair Group Method with Arithmetic Mean) clustering algorithm in Python.☆13Dec 11, 2015Updated 10 years ago
- An implementation of vConv layer.☆11Apr 28, 2021Updated 5 years ago
- Converter functions for the MSstats package☆11Aug 24, 2026Updated last week
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tutorials☆15Apr 2, 2022Updated 4 years ago
- ☆15Aug 18, 2025Updated last year
- A simple Result type in Java for functional exception handling.☆20Dec 13, 2018Updated 7 years ago
- Deep conditional autoregressive models for genome editing sequence-to-sequence problems☆10Jun 29, 2021Updated 5 years ago
- Implementation of BLAST(Basic Local Alignment Search Tool) algorithm in Python 3.5 using Numpy.☆22Apr 14, 2018Updated 8 years ago
- Linear Models for Microarray Data☆14Apr 2, 2014Updated 12 years ago
- ☆16May 30, 2021Updated 5 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Apr 28, 2021Updated 5 years ago
- ☆15Apr 10, 2017Updated 9 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python implementation of Basic Local Alignment Search Tool (BLAST) , which is the core algorithm in sequence alignment for genomes.☆77Oct 13, 2023Updated 2 years ago
- A Shiny wrapper for the UpSetR R package (https://github.com/hms-dbmi/UpSetR).☆21Aug 28, 2017Updated 9 years ago
- Quick Hands-On NLTK tutorial for NLP in Python. NLTK is one of the most popular Python packages for Natural Language Processing (NLP). Ea…☆21Aug 13, 2021Updated 5 years ago
- ☆29Apr 25, 2025Updated last year
- Scientific Computing Benchmarks☆11Mar 13, 2020Updated 6 years ago
- Julia module to handle PLINK BED files☆11Jul 10, 2018Updated 8 years ago
- HPC Examples and Documentation for Julia☆14Feb 7, 2023Updated 3 years ago
- A python library for Collective Matrix Factorization (CMF)☆25Aug 17, 2018Updated 8 years ago
- A pipeline to identify gene family using mutiple tools and scripts.☆12Aug 22, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps☆21Apr 3, 2018Updated 8 years ago
- Tutorial files for the JuliaCon 2020 CxxWrap workshop☆14Jul 26, 2020Updated 6 years ago
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- Tiny R kafka client with rscala☆10Mar 26, 2017Updated 9 years ago
- Repo for the course Applied multivariate statistics☆20Apr 13, 2022Updated 4 years ago
- ☆15Jun 30, 2021Updated 5 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- automatic update Clinvar db for ANNOVAR☆11Aug 24, 2026Updated last week
- A BGEN file format reader.☆12Jan 7, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- This project aims at providing a scalable approach to matrix multiplication, which is one of the most used step in machine learning.☆14Jan 13, 2016Updated 10 years ago
- 36个谷歌镜像：搜索和学术，2022年更新☆10Jul 10, 2022Updated 4 years ago
- ☆16Updated this week
- De novo metagenome assembler☆14Mar 29, 2023Updated 3 years ago
- Easily log timing info in the presence of parallelism☆20Oct 19, 2022Updated 3 years ago
- A lightweight JavaScript task queue☆11Apr 1, 2026Updated 4 months ago
- A fork of the project Excavator2 from sourceforge.☆10Jun 29, 2017Updated 9 years ago