manzik / cmdbench
Quick and easy resource usage monitoring and benchmarking for any command's CPU, memory, disk usage and runtime.
☆24Updated this week
Related projects ⓘ
Alternatives and complementary repositories for cmdbench
- fast, reliable and handy demultiplexing tool for fastx files☆14Updated 7 months ago
- The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.☆18Updated 2 years ago
- Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.☆13Updated 3 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆108Updated last month
- Hail: extract lines from a file, a la `head -n x | tail -n y`☆8Updated 4 years ago
- The modern argument parser for c++ tools☆10Updated this week
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14Updated this week
- SQL-like query language for the SAM/BAM file format☆26Updated last year
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated this week
- Workflows written in common workflow language (CWL)☆14Updated 5 years ago
- Progress indicator library written in C.☆10Updated 2 weeks ago
- 🐦 spideog - Command line utility for Kraken2 reports.☆11Updated 3 years ago
- Basic, no assumptions, multi-pileup☆24Updated 10 years ago
- A compressed, associative, exact, and weighted dictionary for k-mers.☆84Updated last month
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated 2 months ago
- Toolkit for manipulating FASTA and SAM files☆17Updated 8 months ago
- guix packages for bioinformatics software☆22Updated 10 months ago
- ☆57Updated 2 weeks ago
- Command line tool for Wave containers provisioning service☆13Updated last month
- Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differentia…☆13Updated 10 months ago
- Build and maintain multiple custom conda environments all in one place.☆37Updated last year
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆10Updated last week
- Python utilities for CWL☆36Updated this week
- efficient alignment of strings to partially ordered string graphs☆33Updated 2 years ago
- ☆43Updated last year
- linearize and simplify variation graphs using blocked partial order alignment☆56Updated this week
- BioC++ core library (alphabet, meta, ranges)☆19Updated last year
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆35Updated 2 weeks ago
- Portable Crystal binary distributions for Linux on x86_64☆15Updated 3 years ago