agordon / datamashLinks
mirror of GNU Datamash. Send questions/comments/bugs to bug-datamash@gnu.org
☆76Updated 4 months ago
Alternatives and similar repositories for datamash
Users that are interested in datamash are comparing it to the libraries listed below
Sorting:
- Convenience function for quick and dirty data analysis☆69Updated 7 years ago
- Log shell-commands and used files. Snapshot executed scripts. Fully automatic.☆202Updated 4 months ago
- Useful FILe and stream Operations☆45Updated 9 years ago
- Vince Buffalo's devnotes — ½ TIL, ½ notebook☆115Updated 9 years ago
- tv(table viewer) for delimited text file(csv,tsv,etc) in terminal.☆45Updated 4 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆31Updated 9 years ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated last year
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated 9 months ago
- Benchmarking programming languages/implementations for common tasks in Bioinformatics☆185Updated 3 years ago
- A cookiecutter template for Snakemake workflows☆59Updated 3 years ago
- Library of snakemake rules.☆12Updated 6 years ago
- Parallel Block GZIP☆50Updated 9 years ago
- WDL plugin for pytest☆48Updated 2 years ago
- Mulled - Automatized Containerized Software Repository☆66Updated last year
- This is a beginner's tutorial to Snakemake☆70Updated 9 years ago
- A command line program for large scale buffering between piped programs☆17Updated 3 years ago
- Simple tool to verticalize text delimited files.☆37Updated last year
- BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows.☆16Updated 7 years ago
- LAMBDA – the Local Aligner for Massive Biological DatA☆82Updated last year
- ☆38Updated 6 months ago
- ♥ Essential Functions for DNA Manipulation☆20Updated 2 months ago
- Documentation of the Snakemake-Profiles project.☆54Updated 3 years ago
- YAML template engine☆37Updated last week
- GNU-Make-like utility for managing builds and complex workflows☆109Updated last year
- Docker images of bioinformatics software☆21Updated 8 years ago
- Useful small programs☆26Updated 12 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 6 months ago
- Toolkit to analyze genomic variation data, built on the GATK with Clojure☆66Updated 9 years ago