agordon / datamash
mirror of GNU Datamash. Send questions/comments/bugs to bug-datamash@gnu.org
☆73Updated 6 years ago
Related projects: ⓘ
- Convenience function for quick and dirty data analysis☆68Updated 6 years ago
- Simple tool to verticalize text delimited files.☆35Updated 4 months ago
- A command line program for large scale buffering between piped programs☆13Updated 2 years ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆24Updated 4 years ago
- ♥ Essential Functions for DNA Manipulation☆20Updated 2 months ago
- Collection of tiny utilities for working on data streams☆13Updated last year
- Retrieve data in genomic intervals with a Python interface for tabix.☆83Updated 7 years ago
- cache packages permanently☆12Updated 2 months ago
- The command-line interface to GGD☆42Updated last year
- a simple read-only sequence database, designed for short reads☆62Updated 7 months ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 7 months ago
- C++ wrapper to tabix indexer☆17Updated last year
- tv(table viewer) for delimited text file(csv,tsv,etc) in terminal.☆43Updated 3 years ago
- Write-once-read-many table for large datasets.☆28Updated 11 months ago
- SQL-like query language for the SAM/BAM file format☆26Updated last year
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 8 years ago
- A web wrapper for GeneValidator☆11Updated 3 years ago
- YAML template engine☆30Updated 2 months ago
- Useful FILe and stream Operations☆44Updated 8 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Updated 5 months ago
- succinct labeled graphs with collections and paths☆15Updated 5 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 6 years ago
- WDL plugin for pytest☆48Updated last year
- X things you should take into consideration if you code for big data analysis☆24Updated 6 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆44Updated last year
- Library of snakemake rules.☆12Updated 5 years ago
- Build and Deliver Software with Containers☆32Updated 3 years ago
- Log shell-commands and used files. Snapshot executed scripts. Fully automatic.☆169Updated 3 weeks ago
- A cookiecutter template for Snakemake workflows☆57Updated 2 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 3 years ago