hypnopump / rgn2-replicaLinks
Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1
☆37Updated 3 years ago
Alternatives and similar repositories for rgn2-replica
Users that are interested in rgn2-replica are comparing it to the libraries listed below
Sorting:
- Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …☆50Updated last year
- Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some addition…☆56Updated 2 years ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆96Updated 2 years ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆90Updated 2 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆82Updated 3 years ago
- Pytorch reimplementation of Molecule Attention Transformer, which uses a transformer to tackle the graph-like structure of molecules☆59Updated 4 years ago
- Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆74Updated 3 years ago
- ☆34Updated last month
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆113Updated 3 years ago
- A Modular Architecture for Deep Learning Systems☆41Updated last week
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆58Updated 2 years ago
- Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
- Implementation of the Triangle Multiplicative module, used in Alphafold2 as an efficient way to mix rows or columns of a 2d feature map, …☆29Updated 3 years ago
- ☆34Updated 4 years ago
- Open source code for AlphaFold to extract protein embeddings☆26Updated 3 years ago
- pytorch implementation of trDesign☆45Updated 4 years ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆158Updated 2 years ago
- ☆24Updated last month
- Energy-based models for atomic-resolution protein conformations☆97Updated 3 years ago
- Massively-Parallel Natural Extension of Reference Frame☆31Updated 2 years ago
- Implementation of Tranception, an attention network, paired with retrieval, that is SOTA for protein fitness prediction☆32Updated 2 years ago
- ☆118Updated 9 months ago
- Exploring Evolution-aware & free protein language models as protein function predictors☆64Updated 8 months ago
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆121Updated 2 years ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆49Updated last year
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆60Updated this week
- A list of manuscripts/tools using diffusion on biological enttieis☆96Updated last year
- Code for 'On Pre-trained Language Models For Antibody'☆33Updated 2 years ago
- ☆57Updated last year
- Source code for ICLR 2021 paper: "Molecule Optimization by Explainable Evolution"☆29Updated 4 years ago