Variational Auto-Encoder that generates synthetic gene expression data
☆25Apr 7, 2023Updated 3 years ago
Alternatives and similar repositories for rna-seq-vae
Users that are interested in rna-seq-vae are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆15Aug 8, 2024Updated last year
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆13Feb 1, 2021Updated 5 years ago
- Package to preprocess ontologies and train OntoVAE models.☆16Jan 7, 2025Updated last year
- A collection of useful functions for bioinformatics data analysis☆26Mar 19, 2026Updated 3 months ago
- Sequence-to-function deep learning frameworks for engineered riboregulators☆14Aug 3, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆16Jun 8, 2023Updated 3 years ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆34Mar 1, 2026Updated 4 months ago
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆19Feb 11, 2026Updated 4 months ago
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago
- Verify that a local file is identical to an object on Amazon S3, without having to download the object.☆12Sep 6, 2024Updated last year
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 6 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 3 years ago
- Pytorch implementation of EpiFoundation☆27Feb 25, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- rf☆12Jun 23, 2025Updated last year
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 7 months ago
- Research repository for the proposed equivariant graph attention network that operates on large biomolecules proposed by Le et al. (2022)☆20Dec 1, 2022Updated 3 years ago
- ☆14Feb 13, 2022Updated 4 years ago
- Iterative Random Forest based on the Ranger Code Base☆10Sep 14, 2021Updated 4 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Dec 7, 2021Updated 4 years ago
- C implementation of Delaunay Triangulation algorithm, provided with an easy to use GUI.☆11Jan 23, 2021Updated 5 years ago
- Contextual Vision Transformers for Robust Representation Learning☆14Oct 19, 2023Updated 2 years ago
- ☆12Jul 11, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆18Nov 27, 2017Updated 8 years ago
- Minimalistic cross-platform mouse jiggler written in Rust.☆29Jun 19, 2026Updated 2 weeks ago
- TensorFlow Lite for Microcontrollers Python package for Raspberry Pi Zero☆13Jan 24, 2022Updated 4 years ago
- Streaming responses with Streamlit, ChatGPT and Langchain.☆11Apr 7, 2023Updated 3 years ago
- Correlation-based approach for identification of endocrine interactions☆13Jan 18, 2022Updated 4 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Oct 17, 2023Updated 2 years ago
- ☆13May 10, 2021Updated 5 years ago
- Babyplots is an easy to use library for creating interactive 3d graphs for exploring and presenting data. This is the python API that all…☆11Feb 4, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A zero-shot relation extractor, easily downloadable from the HuggingFace repo.☆12Aug 13, 2021Updated 4 years ago
- ☆11May 25, 2025Updated last year
- an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression☆13Feb 26, 2024Updated 2 years ago
- Antibody-Specific Epitope Mapping☆19Sep 10, 2025Updated 9 months ago
- Drug Response Estimation from single-cell Expression Profiles☆13Jan 5, 2024Updated 2 years ago
- Fog Prediction using 3D CNN with dense block and attention☆19Jul 17, 2024Updated last year
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year