lovelyscientist / rna-seq-vaeLinks
Variational Auto-Encoder that generates synthetic gene expression data
☆23Updated 2 years ago
Alternatives and similar repositories for rna-seq-vae
Users that are interested in rna-seq-vae are comparing it to the libraries listed below
Sorting:
- Knowledge distillation on DNABERT (DistilBERT and MiniLM techniques) for promoter identification.☆24Updated 2 years ago
- Biological Network Integration using Convolutions☆62Updated last year
- Images and other data from the JUMP Cell Painting Consortium☆174Updated last week
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆50Updated this week
- ☆65Updated this week
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell lev…☆179Updated last year
- ☆29Updated 3 weeks ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆122Updated 6 months ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆55Updated 2 years ago
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆123Updated 3 years ago
- ☆19Updated 2 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆42Updated last month
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆39Updated last month
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Updated 2 weeks ago
- ☆63Updated 2 years ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆72Updated last week
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆95Updated 2 years ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆36Updated 2 years ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆27Updated 2 weeks ago
- Models and datasets for perturbational single-cell omics☆158Updated 2 years ago
- surrogate quantitative interpretability for deepnets☆24Updated last week
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆44Updated 10 months ago
- Contextual AI models for single-cell protein biology☆88Updated 6 months ago
- Jax code for functional genomics ML☆14Updated 5 months ago
- ☆14Updated 9 months ago
- ☆72Updated 11 months ago
- Comprehensive suite for evaluating perturbation prediction models☆70Updated last week
- Benchmarks for classification of genomic sequences☆151Updated 2 weeks ago