Variational Auto-Encoder that generates synthetic gene expression data
☆25Apr 7, 2023Updated 3 years ago
Alternatives and similar repositories for rna-seq-vae
Users that are interested in rna-seq-vae are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆15Aug 8, 2024Updated last year
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆13Feb 1, 2021Updated 5 years ago
- Package to preprocess ontologies and train OntoVAE models.☆16Jan 7, 2025Updated last year
- A collection of useful functions for bioinformatics data analysis☆26Mar 19, 2026Updated 2 months ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆34Mar 1, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆19Feb 11, 2026Updated 3 months ago
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago
- Verify that a local file is identical to an object on Amazon S3, without having to download the object.☆12Sep 6, 2024Updated last year
- Convert MSP files into a database☆10May 4, 2021Updated 5 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- ☆10Dec 10, 2021Updated 4 years ago
- rf☆12Jun 23, 2025Updated 11 months ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 6 months ago
- ☆12Jul 11, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Minimalistic cross-platform mouse jiggler written in Rust.☆27May 22, 2026Updated last week
- Streaming responses with Streamlit, ChatGPT and Langchain.☆11Apr 7, 2023Updated 3 years ago
- Correlation-based approach for identification of endocrine interactions☆13Jan 18, 2022Updated 4 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Oct 17, 2023Updated 2 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆15Jul 5, 2023Updated 2 years ago
- ☆13May 10, 2021Updated 5 years ago
- Babyplots is an easy to use library for creating interactive 3d graphs for exploring and presenting data. This is the python API that all…☆11Feb 4, 2023Updated 3 years ago
- A zero-shot relation extractor, easily downloadable from the HuggingFace repo.☆12Aug 13, 2021Updated 4 years ago
- ☆11May 25, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MIO: A Foundation Model on Multimodal Tokens☆34Dec 13, 2024Updated last year
- Drug Response Estimation from single-cell Expression Profiles☆12Jan 5, 2024Updated 2 years ago
- Fog Prediction using 3D CNN with dense block and attention☆19Jul 17, 2024Updated last year
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 2 months ago
- Taiga for Dataset management☆12May 5, 2026Updated 3 weeks ago
- HORN network model☆19Jan 7, 2025Updated last year
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Spacewalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js …☆12Nov 8, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for v…☆21Feb 18, 2026Updated 3 months ago
- Manifold learning to detect cell-cell interactions.☆32May 19, 2026Updated last week
- A quick recap of widely used differential analyses methods in R for RNA-seq experiments☆16Dec 7, 2024Updated last year
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆63Updated this week
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated 2 years ago
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 2 years ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆13Mar 27, 2026Updated 2 months ago