Knowledge distillation on DNABERT (DistilBERT and MiniLM techniques) for promoter identification.
☆27Nov 3, 2022Updated 3 years ago
Alternatives and similar repositories for Distillation-DNABERT-Promoter
Users that are interested in Distillation-DNABERT-Promoter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methy…☆15May 6, 2024Updated 2 years ago
- ☆21Dec 21, 2022Updated 3 years ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆780Jan 22, 2026Updated 8 months ago
- GENA-LM is a transformer masked language model trained on human DNA sequence.☆232Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆11Aug 17, 2022Updated 4 years ago
- Meta-analysis of drug target evidence in single-cell data☆17Oct 22, 2024Updated last year
- Data files of promoter and non-promoter sequences used to build CNN models☆13Dec 24, 2016Updated 9 years ago
- DNN-based small variant caller☆12May 2, 2022Updated 4 years ago
- A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expr…☆11Jan 20, 2022Updated 4 years ago
- Genome scale metabolic models in SBML format☆11Nov 16, 2021Updated 4 years ago
- Official implementation of JAMIE, Joint variational Autoencoders for Multimodal Imputation and Embedding☆17Sep 11, 2025Updated last year
- The code of "Deep Regression Representation Learning with Topology" in ICML 2024☆14Jul 4, 2024Updated 2 years ago
- WordPress plugin that makes building analytics friendly links quick and easy.☆11Sep 9, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A script to run HLA typing tools from next generation sequencing data☆11Jan 4, 2023Updated 3 years ago
- Foundation Models for Genomics & Transcriptomics☆923Feb 24, 2026Updated 7 months ago
- A Mendelian approach to variant effect prediction built in keras☆22Aug 22, 2026Updated last month
- zig build add-on (add more toolchains [LLVM-based] support)☆14May 5, 2025Updated last year
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 11 months ago
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆517Jan 1, 2026Updated 9 months ago
- A Nextflow workflow for HLA typing using HLA-HD☆15Jul 3, 2024Updated 2 years ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 3 years ago
- ☆13Mar 20, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- code to run sei and obtain sei and sequence class predictions☆118Dec 20, 2022Updated 3 years ago
- ☆12Oct 4, 2021Updated 5 years ago
- Matrix Product State algorithm for computing characters of the symmetric group S_n☆11Sep 26, 2025Updated last year
- ☆10Dec 11, 2024Updated last year
- weeks1-2☆25Dec 19, 2018Updated 7 years ago
- SHApe simulation with graph KERnels☆10May 17, 2021Updated 5 years ago
- Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".☆14Aug 10, 2022Updated 4 years ago
- ☆42Jun 8, 2026Updated 4 months ago
- Official source code for Time is Not Enough: Time-Frequency based Explanation for Time-Series Black-Box Models☆14Dec 5, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- CpG Transformer for imputation of single-cell methylomes☆39Sep 14, 2023Updated 3 years ago
- ☆22May 12, 2026Updated 4 months ago
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆17Feb 12, 2026Updated 7 months ago
- trackc aims to produce beautiful genome tracks that are highly customizable☆19Jun 6, 2026Updated 4 months ago
- MethyLYZR: a Naïve Bayesian framework for rapid brain tumor classification from sparse epigenomic data☆19Mar 3, 2025Updated last year
- ☆11Jun 14, 2019Updated 7 years ago
- ☆16Mar 15, 2023Updated 3 years ago