joanaapa / Distillation-DNABERT-PromoterLinks
Knowledge distillation on DNABERT (DistilBERT and MiniLM techniques) for promoter identification.
☆23Updated 2 years ago
Alternatives and similar repositories for Distillation-DNABERT-Promoter
Users that are interested in Distillation-DNABERT-Promoter are comparing it to the libraries listed below
Sorting:
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 6 months ago
- ☆34Updated last month
- ☆27Updated last week
- Jax code for functional genomics ML☆14Updated 3 months ago
- ☆33Updated 2 years ago
- ☆18Updated last year
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆39Updated 3 years ago
- ☆29Updated 5 months ago
- Computational Optimization of DNA Activity (CODA)☆60Updated 2 months ago
- CpGPT: a Foundation Model for DNA Methylation.☆43Updated 2 weeks ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆32Updated 3 months ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆19Updated last year
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆61Updated last week
- Knowledge-primed neural networks☆38Updated 2 years ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆21Updated 3 weeks ago
- ☆34Updated 3 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆43Updated 7 months ago
- For fine-tuning Enformer using paired WGS & gene expression data☆17Updated last month
- Variational Auto-Encoder that generates synthetic gene expression data☆23Updated 2 years ago
- ☆40Updated last year
- Create cell sentences from sequencing data☆22Updated 10 months ago
- Evaluating genomic sequence models for explaining personalized expression variation☆20Updated last year
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 5 months ago
- CpG Transformer for imputation of single-cell methylomes☆38Updated last year
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆25Updated last month
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆48Updated last month
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆82Updated 9 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆42Updated 8 months ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆95Updated last year
- Dataloader for applying sequence models to personalized genomics☆26Updated this week