Alternatives and similar repositories for xcms

Users that are interested in xcms are comparing it to the libraries listed below

• lgatto / MSnbase
  Base Classes and Functions for Mass Spectrometry and Proteomics
  ☆134Updated 3 weeks ago
• mzmine / mzmine2
  MZmine 2 source code repository
  ☆133Updated last year
• CompOmics / ThermoRawFileParser
  Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono
  ☆223Updated 2 weeks ago
• fgcz / rawrr
  Access Orbitrap data in R lang using C# .NET assembly - bioconductor package
  ☆57Updated 2 months ago
• Vitek-Lab / MSstats
  R package - MSstats
  ☆85Updated last week
• systemsomicslab / MsdialWorkbench
  Universal workbench incorporating msdial, msfinder, and mrmprobs
  ☆80Updated this week
• cbielow / PTXQC
  A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
  ☆46Updated 2 months ago
• rickhelmus / patRoon
  Workflow solutions for mass-spectrometry based non-target analysis.
  ☆67Updated last week
• fgcz / rawDiag
  Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package
  ☆36Updated last year
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆95Updated 2 weeks ago
• shuzhao-li-lab / asari
  asari, metabolomics data preprocessing
  ☆53Updated last month
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆48Updated 2 years ago
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆12Updated 4 years ago
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆65Updated 2 years ago
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆47Updated 2 years ago
• ftwkoopmans / msdap
  MS-DAP: downstream analysis pipeline for quantitative proteomics
  ☆39Updated 6 months ago
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆55Updated 2 months ago
• systemsomicslab / mtbinfo.github.io
  ☆30Updated last year
• SlavovLab / DO-MS
  An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.
  ☆25Updated 6 months ago
• jpquast / protti
  Picotti lab data analysis package.
  ☆64Updated 5 months ago
• RASpicer / MetabolomicsTools
  ☆55Updated 4 years ago
• xia-lab / MetaboAnalystR
  R package for MetaboAnalyst
  ☆355Updated this week
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆24Updated 2 weeks ago
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆31Updated 6 months ago
• smith-chem-wisc / MetaMorpheus
  Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
  ☆102Updated 3 weeks ago
• DorresteinLaboratory / XCMS3_FeatureBasedMN
  ☆13Updated 3 years ago
• XiaoyangSu / AccuCor
  ☆17Updated last year
• sneumann / mzR
  This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…
  ☆45Updated 2 weeks ago
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆28Updated 2 years ago
• YanglabWCH / StatsPro
  StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…
  ☆13Updated 3 years ago