Alternatives and similar repositories for xcms

Users that are interested in xcms are comparing it to the libraries listed below

• lgatto / MSnbase
  Base Classes and Functions for Mass Spectrometry and Proteomics
  ☆135Updated 2 months ago
• shuzhao-li-lab / asari
  asari, metabolomics data preprocessing
  ☆55Updated 3 weeks ago
• rickhelmus / patRoon
  Workflow solutions for mass-spectrometry based non-target analysis.
  ☆68Updated this week
• mzmine / mzmine2
  MZmine 2 source code repository
  ☆134Updated last year
• fgcz / rawrr
  Access Orbitrap data in R lang using C# .NET assembly - bioconductor package
  ☆58Updated 2 months ago
• CompOmics / ThermoRawFileParser
  Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono
  ☆230Updated 3 weeks ago
• SlavovLab / DO-MS
  An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.
  ☆27Updated 8 months ago
• Vitek-Lab / MSstats
  R package - MSstats
  ☆87Updated last month
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆98Updated last month
• RASpicer / MetabolomicsTools
  ☆55Updated 4 years ago
• systemsomicslab / MsdialWorkbench
  Universal workbench incorporating msdial, msfinder, and mrmprobs
  ☆87Updated this week
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆12Updated 4 years ago
• cbielow / PTXQC
  A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
  ☆47Updated 4 months ago
• fgcz / rawDiag
  Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package
  ☆37Updated last year
• sneumann / mzR
  This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…
  ☆46Updated 2 months ago
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆49Updated 2 years ago
• antonvsdata / notame
  An R package for non-targeted LC-MS metabolomics
  ☆20Updated 2 weeks ago
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆31Updated last month
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆27Updated 2 years ago
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆48Updated 2 years ago
• systemsomicslab / mtbinfo.github.io
  ☆30Updated last year
• jpquast / protti
  Picotti lab data analysis package.
  ☆64Updated 7 months ago
• ftwkoopmans / msdap
  MS-DAP: downstream analysis pipeline for quantitative proteomics
  ☆39Updated 8 months ago
• Proteomicslab57357 / UniprotR
  Retrieving Information of Proteins from Uniprot
  ☆71Updated last year
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆65Updated 2 years ago
• xia-lab / MetaboAnalystR
  R package for MetaboAnalyst
  ☆363Updated last week
• smith-chem-wisc / MetaMorpheus
  Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
  ☆103Updated 2 weeks ago
• CCMS-UCSD / GNPS_Workflows
  Public Workflows at GNPS
  ☆64Updated last year
• zhengfj1994 / MetEx
  MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.
  ☆18Updated 2 years ago
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆93Updated last year