Supporting code for the paper "Predicting aptamer sequences that interact with target proteins using an Aptamer-Protein Interaction classifier and a Monte-Carlo tree search approach". Please issue for any errors or helps.
☆16Dec 31, 2021Updated 4 years ago
Alternatives and similar repositories for Apta-MCTS
Users that are interested in Apta-MCTS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AptaNet as a Deep Learning approach for Aptamer-Protein Interaction Prediction☆28Jun 15, 2021Updated 5 years ago
- Aptamers are single-stranded nucleic acid or amino acid polymers that recognize and bind to targets with high affinity and selectivity. …☆16Jun 22, 2020Updated 6 years ago
- ☆32Oct 3, 2023Updated 3 years ago
- wwPDB PDBx/mmCIF Dictionary☆10Oct 27, 2026Updated 2 weeks ago
- init commit☆16Oct 31, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆21Jun 27, 2018Updated 8 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- ☆10Nov 18, 2022Updated 3 years ago
- Render viral capsids in the browser and export SVG.☆13Sep 28, 2026Updated last month
- A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.☆30Apr 14, 2023Updated 3 years ago
- A project to survey the possibilities of a graph database Neo4j in building decision tree algorithms using stored procedures.☆10Nov 21, 2023Updated 2 years ago
- pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction☆29Apr 24, 2024Updated 2 years ago
- CapR calculates probabilities that each RNA base position is located within each secondary structural context for long RNA sequences.☆10Oct 10, 2020Updated 6 years ago
- aligning molecules☆10Apr 24, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Deep Generative Models: Diffusion Models for Molecule Generation☆10Jun 17, 2024Updated 2 years ago
- Sentieon DNAscope + Machine Learning Model☆12Mar 19, 2025Updated last year
- Breast cancer risk prediction using genotyped data☆12Oct 11, 2018Updated 8 years ago
- ☆11Dec 13, 2023Updated 2 years ago
- RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)☆13Mar 20, 2024Updated 2 years ago
- Helpful handful of programs, completely open-source and free☆11Mar 26, 2021Updated 5 years ago
- MicroPheno Project☆12Oct 21, 2022Updated 4 years ago
- Companion repository for the human variant calling pipeline comparison paper☆12Feb 21, 2022Updated 4 years ago
- Cartoon mesh generation for secondary structure of proteins in C++☆10Jan 14, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing☆11Jan 7, 2020Updated 6 years ago
- AutoML system for building trustworthy peptide bioactivity predictors☆42Oct 25, 2026Updated 2 weeks ago
- Re-encryption by proxy and (additive) homomorphic encryption☆13Oct 10, 2018Updated 8 years ago
- This project is a modernized reimplementation of the original Speck molecule renderer created by Rye Terrell.☆21Feb 22, 2026Updated 8 months ago
- 유니티 교과서, 개정6판☆20Jul 4, 2023Updated 3 years ago
- Import script needed to build FluPRINT database from source☆11May 23, 2019Updated 7 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆10Oct 29, 2020Updated 6 years ago
- Study management software for lab-based research organizations☆12Jan 7, 2023Updated 3 years ago
- ☆10Oct 6, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A transposition caller.☆12Oct 5, 2023Updated 3 years ago
- Rank binders by structure modeling☆11Apr 10, 2026Updated 7 months ago
- Official Implementation of Paper "Learning to Jump: Thinning and Thickening Latent Counts for Generative Modeling" (ICML 2023)☆10Jun 6, 2023Updated 3 years ago
- Cardiac Electrophysiology solver in FEniCSx☆15Nov 3, 2026Updated last week
- Tool to compute molecular Solvent Excluded Surface meshes on the GPU using CUDA☆18Jun 30, 2026Updated 4 months ago
- Segmentation of nucleic acid binding interface on protein surface with geometric deep learning☆15May 3, 2023Updated 3 years ago
- Taiga for Dataset management☆12May 5, 2026Updated 6 months ago
Are these results useful?