leekh7411 / Apta-MCTSLinks
Supporting code for the paper "Predicting aptamer sequences that interact with target proteins using an Aptamer-Protein Interaction classifier and a Monte-Carlo tree search approach". Please issue for any errors or helps.
☆14Updated 3 years ago
Alternatives and similar repositories for Apta-MCTS
Users that are interested in Apta-MCTS are comparing it to the libraries listed below
Sorting:
- Neural Networks for Protein Sequence Alignment☆131Updated 11 months ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆164Updated last week
- ☆14Updated last year
- Evolutionary velocity with protein language models☆94Updated 2 years ago
- Deep networks for protein functional inference☆177Updated 4 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆82Updated last year
- ☆80Updated 2 years ago
- Multi-class signal peptide prediction and structure decoding model.☆96Updated 9 months ago
- MMseqs2 app to run on your workstation or servers☆97Updated last week
- Feature Extraction Package for Biological Sequences☆65Updated this week
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 7 months ago
- Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical pro…☆33Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆185Updated last year
- ☆20Updated 4 years ago
- A deep learning toolkit for mass spectrometry☆84Updated this week
- Modelling the Language of Life - Deep Learning Protein Sequences☆121Updated 5 years ago
- A software package for computing features of peptides and proteins☆65Updated last year
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last week
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆50Updated last year
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆108Updated last month
- ☆74Updated last year
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated last year
- Deep learning framework for proteomics☆132Updated 2 months ago
- Inference of couplings in proteins and RNAs from sequence variation☆113Updated 2 years ago
- Protein structure comparison tools such as SSAP and SNAP☆66Updated last year
- A list of tools on proteomics using deep learning☆106Updated last year
- ☆36Updated 9 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- A collection of available Python tools for Proteomics analysis☆61Updated 6 years ago