leekh7411 / Apta-MCTSLinks
Supporting code for the paper "Predicting aptamer sequences that interact with target proteins using an Aptamer-Protein Interaction classifier and a Monte-Carlo tree search approach". Please issue for any errors or helps.
☆14Updated 4 years ago
Alternatives and similar repositories for Apta-MCTS
Users that are interested in Apta-MCTS are comparing it to the libraries listed below
Sorting:
- ☆28Updated 2 years ago
- Neural Networks for Protein Sequence Alignment☆135Updated last year
- ☆86Updated 2 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆88Updated last year
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆51Updated 2 years ago
- Multi-class signal peptide prediction and structure decoding model.☆102Updated 11 months ago
- Evolutionary velocity with protein language models☆95Updated last month
- Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical pro…☆35Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆191Updated last year
- Mutation effects predicted from sequence co-variation☆72Updated 8 years ago
- ☆22Updated 3 years ago
- NetSurfP 3.0: Protein secondary structure and relative solvent accessibility prediction☆24Updated 2 years ago
- MMseqs2 app to run on your workstation or servers☆104Updated this week
- iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of auto…☆122Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆60Updated last month
- Install alphafold on the local machine, get out of docker.☆103Updated 4 years ago
- ☆21Updated 3 years ago
- ☆76Updated last year
- Code repository of "Deep generative design of RNA family sequences"☆40Updated 2 months ago
- Draw RNA secondary structures in python.☆49Updated 7 months ago
- ☆20Updated 4 years ago
- ☆36Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆41Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆63Updated 10 months ago
- Feature map and function annotation of Proteins☆34Updated last year
- ColabFold protocol☆56Updated last year
- ☆11Updated 2 years ago
- ☆15Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆75Updated 2 years ago