laszlognagy / COMPARE
compare
☆9Updated 8 years ago
Alternatives and similar repositories for COMPARE:
Users that are interested in COMPARE are comparing it to the libraries listed below
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 7 months ago
- ☆32Updated 4 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆15Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated this week
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 9 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 4 months ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- genomic alignment similarity search tool☆18Updated 10 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- ☆26Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ☆12Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- Metagenomic binning suite☆29Updated 2 years ago
- Haploidy and Size Completeness Estimation☆13Updated last year
- ☆22Updated 11 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆42Updated last year
- scripts to parse and analyse MCScanX collinearity output☆31Updated 5 years ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 3 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 2 months ago